Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042689 Camellia sinensis var. sinensis HOM05D035626 ORTHO05D014366 6.9e-37 156.8 77 100.0
CSS0042600 Camellia sinensis var. sinensis HOM05D035626 ORTHO05D014366 5.8e-36 153.7 77 97.4
CSS0023357 Camellia sinensis var. sinensis HOM05D035626 ORTHO05D014366 5.9e-20 100.5 77 70.1
CSS0027576 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D000951 2.8e-14 81.6 39 97.4
Lj9C490T6 Lonicera japonica HOM05D000458 ORTHO05D014366 5.3e-13 77.4 43 83.7
CSS0026060 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D000951 3.4e-12 74.7 42 83.3
Atru.chr1.2824 Acer truncatum HOM05D000458 ORTHO05D000951 5.9e-12 73.9 40 85.0
Thecc.06G133400 Theobroma cacao HOM05D000458 ORTHO05D000951 5.9e-12 73.9 40 85.0
COL.COLO4_30899 Corchorus olitorius HOM05D000458 ORTHO05D000951 7.7e-12 73.6 38 89.5
Gohir.A05G143300 Gossypium hirsutum HOM05D000458 ORTHO05D000951 7.7e-12 73.6 40 85.0
Gohir.D05G145700 Gossypium hirsutum HOM05D000458 ORTHO05D000951 7.7e-12 73.6 40 85.0
Gorai.009G149600 Gossypium raimondii HOM05D000458 ORTHO05D000951 7.7e-12 73.6 40 85.0
Gohir.A10G049200 Gossypium hirsutum HOM05D000458 ORTHO05D000951 1.0e-11 73.2 40 85.0
Gorai.011G053300 Gossypium raimondii HOM05D000458 ORTHO05D000951 1.0e-11 73.2 40 85.0
BcaB02g07229 Brassica carinata HOM05D000458 ORTHO05D000951 1.3e-11 72.8 40 80.0
A07p27030 Brassica napus HOM05D000458 ORTHO05D000951 1.3e-11 72.8 40 80.0
BraA07t30347Z Brassica rapa HOM05D000458 ORTHO05D000951 1.3e-11 72.8 40 80.0
Ciclev10025035m.g Citrus clementina HOM05D000458 ORTHO05D000951 2.2e-11 72.0 42 76.2
BcaNung04175 Brassica carinata HOM05D000458 ORTHO05D000951 2.9e-11 71.6 40 77.5
C06p29760 Brassica napus HOM05D000458 ORTHO05D000951 2.9e-11 71.6 40 77.5
BolC6t38137H Brassica oleracea HOM05D000458 ORTHO05D000951 2.9e-11 71.6 40 77.5
Duzib160G0242 Durio zibethinus HOM05D000458 ORTHO05D000951 2.9e-11 71.6 38 86.8
QL05p081629 Quercus lobata HOM05D000458 ORTHO05D000951 2.9e-11 71.6 40 82.5
THA.LOC104808159 Tarenaya hassleriana HOM05D000458 ORTHO05D000951 2.9e-11 71.6 40 80.0
Lj5A83G38 Lonicera japonica HOM05D000458 ORTHO05D000951 3.8e-11 71.2 40 80.0
Duzib235G0578 Durio zibethinus HOM05D000458 ORTHO05D000951 5.0e-11 70.9 40 80.0
MSTRG.22835 Avicennia marina HOM05D000458 ORTHO05D000951 8.5e-11 70.1 41 75.6
Haze_15241 Corylus avellana HOM05D000458 ORTHO05D000951 8.5e-11 70.1 41 78.0
Manes.04G098600 Manihot esculenta HOM05D000458 ORTHO05D000951 8.5e-11 70.1 38 84.2
AT1G79640 Arabidopsis thaliana HOM05D000458 ORTHO05D000951 1.1e-10 69.7 40 77.5
BcaC08g47523 Brassica carinata HOM05D000458 ORTHO05D000951 1.1e-10 69.7 40 77.5
A07p44650 Brassica napus HOM05D000458 ORTHO05D000951 1.1e-10 69.7 40 77.5
C06p53490 Brassica napus HOM05D000458 ORTHO05D000951 1.1e-10 69.7 40 77.5
BolC6t40364H Brassica oleracea HOM05D000458 ORTHO05D000951 1.1e-10 69.7 40 77.5
BraA07t31974Z Brassica rapa HOM05D000458 ORTHO05D000951 1.1e-10 69.7 40 77.5
CARHR073370 Cardamine hirsuta HOM05D000458 ORTHO05D000951 1.1e-10 69.7 40 77.5
Lalb_Chr25g0278571 Lupinus albus HOM05D000458 ORTHO05D000951 1.1e-10 69.7 39 82.1
Medtr4g005730 Medicago truncatula HOM05D000458 ORTHO05D000951 1.1e-10 69.7 40 80.0
TPR.G38829 Trifolium pratense HOM05D000458 ORTHO05D000951 1.1e-10 69.7 40 80.0
Carub.0002s2652 Capsella rubella HOM05D000458 ORTHO05D000951 1.4e-10 69.3 40 77.5
Thhalv10018218m.g Eutrema salsugineum HOM05D000458 ORTHO05D000951 1.4e-10 69.3 40 77.5
Oeu012868.2 Olea europaea HOM05D000458 ORTHO05D014366 1.4e-10 69.3 41 73.2
Phvul.010G163200 Phaseolus vulgaris HOM05D000458 ORTHO05D000951 1.4e-10 69.3 40 82.5
Sp5g34710 Schrenkiella parvula HOM05D000458 ORTHO05D000951 1.4e-10 69.3 40 75.0
Glyma.07G002900 Glycine max HOM05D000458 ORTHO05D000951 1.9e-10 68.9 40 80.0
Lj3g0027480 Lotus japonicus HOM05D000458 ORTHO05D000951 2.5e-10 68.6 40 77.5
Psat7g264440 Pisum sativum HOM05D000458 ORTHO05D000951 2.5e-10 68.6 40 77.5
Potri.001G037900 Populus trichocarpa HOM05D000458 ORTHO05D000951 3.2e-10 68.2 40 80.0
Aa31LG4G1330 Aethionema arabicum HOM05D000458 ORTHO05D000951 4.2e-10 67.8 42 69.0
AL2G40330 Arabidopsis lyrata HOM05D000458 ORTHO05D000951 4.2e-10 67.8 38 78.9
Cc04_g05430 Coffea canephora HOM05D000458 ORTHO05D014366 4.2e-10 67.8 42 71.4
DCAR_016321 Daucus carota HOM05D000696 ORTHO05D003201 4.2e-10 67.8 37 81.1
DCAR_021378 Daucus carota HOM05D000478 ORTHO05D000345 4.2e-10 67.8 37 81.1
GSVIVG01016073001 Vitis vinifera HOM05D000458 ORTHO05D014366 4.2e-10 67.8 40 72.5
Glyma.08G223700 Glycine max HOM05D000458 ORTHO05D000951 5.5e-10 67.4 38 81.6
TWI75G0382 Tripterygium wilfordii HOM05D000458 ORTHO05D000951 7.2e-10 67.0 42 69.0
Rhsim08G0201300 Rhododendron simsii HOM05D000696 ORTHO05D003201 9.4e-10 66.6 47 72.3
Aa31LG7G740 Aethionema arabicum HOM05D000458 ORTHO05D000951 1.2e-09 66.2 40 75.0
Ca_20963_v3 Cicer arietinum L. HOM05D000458 ORTHO05D000951 1.2e-09 66.2 40 75.0
TAR383G0841 Trochodendron aralioides HOM05D000458 ORTHO05D000951 1.2e-09 66.2 40 72.5
Actinidia25492 Actinidia chinensis HOM05D000458 ORTHO05D000951 1.6e-09 65.9 42 73.8
TAR585G0001 Trochodendron aralioides HOM05D000458 ORTHO05D000951 1.6e-09 65.9 40 75.0
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 1.6e-09 65.9 49 69.4
VMungo0331G0511 Vigna mungo HOM05D000458 ORTHO05D000951 1.6e-09 65.9 38 81.6
MBI14_g41163_MAGBIO Magnolia biondii HOM05D000458 ORTHO05D014366 2.7e-09 65.1 40 70.0
MBI14_g48285_MAGBIO Magnolia biondii HOM05D000458 ORTHO05D014366 2.7e-09 65.1 40 70.0
Peaxi162Scf00314g00922 Petunia axillaris HOM05D000458 ORTHO05D000951 2.7e-09 65.1 52 59.6
Rhsim12G0183200 Rhododendron simsii HOM05D000458 ORTHO05D000951 3.6e-09 64.7 39 79.5
Hma1.2p1_1774F.1_g301810 Hydrangea macrophylla HOM05D000458 ORTHO05D014366 4.6e-09 64.3 35 82.9
Sabra03G0136800 Salix brachista HOM05D000458 ORTHO05D000951 6.1e-09 63.9 38 81.6
CiPaw.01G051500 Carya illinoinensis HOM05D000458 ORTHO05D000951 7.9e-09 63.5 40 77.5
PSO063G4714 Papaver somniferum HOM05D000458 ORTHO05D000951 1.0e-08 63.2 38 73.7
TWI79G1061 Tripterygium wilfordii HOM05D000458 ORTHO05D000951 1.0e-08 63.2 38 76.3
Rhsim08G0139700 Rhododendron simsii HOM05D001206 ORTHO05D014366 2.3e-08 62.0 42 76.2
PSO782G4144 Papaver somniferum HOM05D000458 ORTHO05D000951 3.0e-08 61.6 38 71.1
unitig_22.g6278 Utricularia gibba HOM05D000458 ORTHO05D014366 3.9e-08 61.2 50 56.0
Manes.11G070900 Manihot esculenta HOM05D000458 ORTHO05D000951 5.1e-08 60.8 40 70.0
Solyc03g117790.2 Solanum lycopersicum HOM05D000458 ORTHO05D000951 6.7e-08 60.5 38 73.7
Sopen03g036700 Solanum pennellii HOM05D000458 ORTHO05D000951 6.7e-08 60.5 38 73.7
PGSC0003DMG402014218 Solanum tuberosum HOM05D000458 ORTHO05D000951 6.7e-08 60.5 38 73.7
ATR0580G139 Amborella trichopoda HOM05D000458 ORTHO05D014366 1.5e-07 59.3 40 65.0
Nitab4.5_0004553g0020 Nicotiana tabacum HOM05D000458 ORTHO05D000951 2.0e-07 58.9 42 66.7
Nitab4.5_0004194g0010 Nicotiana tabacum HOM05D000458 ORTHO05D000951 2.6e-07 58.5 38 73.7
Lsat_1_v5_gn_1_30741 Lactuca sativa HOM05D000458 ORTHO05D000951 3.3e-07 58.2 38 71.1
HPP92_017163 Vanilla planifolia HOM05D000458 ORTHO05D000951 3.3e-07 58.2 38 68.4
Actinidia36858 Actinidia chinensis HOM05D000458 ORTHO05D000951 5.7e-07 57.4 38 76.3
Potri.003G186700 Populus trichocarpa HOM05D000458 ORTHO05D000951 5.7e-07 57.4 38 73.7
Os02g0791700 Oryza sativa ssp. japonica HOM05D000458 ORTHO05D000951 7.4e-07 57.0 40 57.5
CAN.G1008.17 Capsicum annuum HOM05D000458 ORTHO05D000951 1.7e-06 55.8 38 71.1
Zm00001eb257600 Zea mays HOM05D000458 ORTHO05D000951 2.2e-06 55.5 40 57.5
HanXRQChr08g0235901 Helianthus annuus HOM05D000458 ORTHO05D000951 2.8e-06 55.1 40 70.0
Lsat_1_v5_gn_5_9141 Lactuca sativa HOM05D000458 ORTHO05D000951 3.7e-06 54.7 40 62.5
Eucgr.F03991 Eucalyptus grandis HOM05D000458 ORTHO05D000951 4.8e-06 54.3 37 59.5
Sed0017073 Sechium edule HOM05D000458 ORTHO05D000951 4.8e-06 54.3 38 57.9
ECA246G0758 Erigeron canadensis HOM05D000458 ORTHO05D000951 6.3e-06 53.9 40 60.0
ClCG10G012850 Citrullus lanatus HOM05D000458 ORTHO05D000951 8.2e-06 53.5 38 57.9
CsaV3_3G032690 Cucumis sativus L. HOM05D000458 ORTHO05D000951 8.2e-06 53.5 38 57.9
Zm00001eb192580 Zea mays HOM05D000458 ORTHO05D000951 8.2e-06 53.5 40 57.5


User provided reference genes

Program Settings