Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 0.0e+00 2454.1 1264 100.0
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1380.2 1468 57.0
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1370.9 1456 56.7
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 0.0e+00 1349.3 1313 61.2
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 0.0e+00 1330.9 1279 61.1
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 0.0e+00 1309.7 1379 57.4
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.9e-310 1068.9 1294 51.7
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.0e-299 1033.9 1441 48.2
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.7e-295 1019.2 1488 47.0
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 5.6e-293 1011.5 1476 46.8
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 5.6e-285 984.9 1429 46.6
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 2.8e-284 982.6 1433 46.7
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.8e-283 979.9 1429 46.3
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 2.3e-283 979.5 1378 47.5
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.5e-282 976.9 1454 45.7
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 7.5e-282 974.5 1454 45.7
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 2.7e-279 966.1 1382 47.8
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 2.7e-279 966.1 1358 47.6
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.5e-277 959.5 1453 45.9
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 9.5e-277 957.6 1420 46.3
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 1.1e-275 954.1 1388 46.7
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 1.5e-269 933.7 1431 46.3
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 8.1e-268 927.9 1349 47.3
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 4.4e-266 922.2 1423 44.4
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 3.8e-265 919.1 1372 45.6
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.1e-263 913.3 1372 44.9
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.3e-262 910.6 1372 45.3
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 2.8e-260 902.9 1400 46.4
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 1.5e-258 897.1 1440 44.5
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 2.6e-258 896.3 1344 45.8
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.1e-256 891.0 1392 46.4
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.6e-255 887.1 1184 48.7
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 6.0e-255 885.2 1368 45.0
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 3.9e-254 882.5 1408 44.8
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 2.1e-252 876.7 1370 43.8
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.4e-251 874.0 1393 45.8
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 2.4e-251 873.2 1391 46.0
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 9.0e-251 871.3 1413 43.9
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.5e-250 870.5 1214 47.3
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.6e-247 860.5 1404 44.3
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 3.0e-246 856.3 1435 42.6
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 5.1e-246 855.5 1430 43.5
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 6.7e-246 855.1 1404 42.8
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.3e-244 850.9 1396 43.7
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 1.6e-244 850.5 1430 42.8
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 2.2e-241 840.1 1421 42.6
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.2e-241 840.1 1287 45.3
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 6.5e-241 838.6 1434 42.3
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 4.2e-240 835.9 1251 45.6
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 1.0e-238 831.2 1369 43.1
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 6.3e-236 822.0 1368 42.5
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 9.0e-235 818.1 1320 42.3
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 2.2e-233 813.5 1392 42.7
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 5.7e-229 798.9 661 68.2
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 5.7e-229 798.9 1420 42.0
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 4.5e-226 789.3 1328 44.0
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 1.3e-225 787.7 1246 43.9
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 2.9e-225 786.6 1240 44.4
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 1.1e-224 784.6 1220 44.0
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 2.3e-222 776.9 1261 44.3
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 6.7e-222 775.4 1380 41.9
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 1.3e-220 771.2 1120 45.8
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 2.8e-220 770.0 1392 41.0
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 2.4e-219 766.9 1262 43.7
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 1.5e-218 764.2 1133 45.4
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 1.0e-217 761.5 1228 44.2
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.0e-217 761.5 1229 43.8
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 5.0e-217 759.2 1171 44.7
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 5.9e-210 735.7 1249 42.9
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 5.2e-206 722.6 1169 43.2
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.1e-203 714.9 1243 42.5
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 9.1e-203 711.8 1311 40.2
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.5e-200 704.5 1308 41.5
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 2.1e-199 700.7 1356 40.0
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.4e-197 693.3 978 46.4
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 1.7e-193 681.0 1247 41.0
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.8e-190 671.0 1232 40.3
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.9e-188 662.9 1130 41.9
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.8e-187 661.0 1381 37.9
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 5.9e-186 656.0 1177 42.1
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 3.4e-181 640.2 1243 40.3
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.8e-179 634.4 1223 40.6
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 3.2e-179 633.6 1173 40.5
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 6.6e-177 625.9 1331 37.0
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.1e-176 625.2 1357 36.9
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 1.5e-173 614.8 1274 39.2
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 2.2e-172 610.9 1211 39.1
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.9e-171 607.8 1151 41.0
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 3.2e-171 607.1 1177 40.4
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 6.6e-169 599.4 1163 39.8
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 6.6e-169 599.4 1163 39.8
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 4.7e-167 593.2 1364 36.3
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 8.1e-167 592.4 1173 39.6
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 2.3e-166 590.9 1159 39.3
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 5.2e-166 589.7 1205 39.1
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 8.9e-166 589.0 1351 37.7
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 1.7e-153 548.1 1366 36.6
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.6e-151 541.6 1031 38.0
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.6e-149 534.3 816 45.1
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 1.1e-136 492.3 1265 35.1
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.1e-135 486.1 608 49.8
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 5.8e-133 479.9 572 53.0
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 9.0e-118 429.5 944 35.3
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.5e-117 428.7 803 41.5
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.5e-112 412.1 768 38.5
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.1e-110 404.4 1195 34.1
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 4.5e-109 400.6 621 44.4
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 2.3e-105 388.3 446 51.6
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.8e-97 362.1 480 48.3
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 1.2e-88 332.8 429 48.7
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 4.5e-85 320.9 754 37.5
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.2e-84 318.5 590 40.3
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 6.5e-84 317.0 687 37.0
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 8.5e-84 316.6 473 45.7
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.9e-83 315.5 288 63.2
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 9.5e-75 286.6 649 37.4
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 6.6e-68 263.8 296 51.4
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 2.5e-59 235.3 445 39.3
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 3.3e-59 235.0 445 39.6
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 5.8e-56 224.2 523 36.9
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.2e-53 216.5 276 47.8
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 2.0e-53 215.7 592 33.4
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 4.6e-53 214.5 336 42.3
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 2.3e-49 202.2 519 34.1
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.2e-46 191.8 239 48.5
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 2.7e-45 188.7 409 36.9
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.5e-45 188.3 726 29.5
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 3.0e-44 185.3 148 62.2
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.2e-39 169.1 270 45.9
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 1.4e-38 166.4 264 46.6
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.7e-36 159.5 840 23.6
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 7.3e-35 154.1 500 31.8
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.7e-31 142.9 462 33.1
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.7e-28 132.9 247 40.9
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 1.1e-25 123.6 108 58.3
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.0e-24 119.4 124 52.4
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.6e-19 101.3 236 35.6
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 8.1e-18 97.4 530 29.1
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.9e-17 94.4 108 57.4
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.4e-14 85.9 63 65.1
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 2.5e-11 75.9 607 24.4
MD05G1347200 Malus domestica HOM05D002890 ORTHO05D005855 3.3e-11 75.5 368 31.2
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 4.8e-10 71.6 91 49.5
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 1.8e-09 69.7 130 41.5
SHI02204 Sapria himalayana HOM05D002890 ORTHO05D005855 8.4e-07 60.8 154 34.4


User provided reference genes

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