Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042678 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D109893 2.9e-72 275.0 131 100.0
CANSAT01G1907 Cannabis sativa HOM05D002321 ORTHO05D006445 1.2e-09 67.0 38 84.2
Dinv29681 Davidia involucrata HOM05D002321 ORTHO05D006445 2.1e-09 66.2 38 84.2
Rhsim05G0115000 Rhododendron simsii HOM05D002321 ORTHO05D006445 2.1e-09 66.2 38 84.2
arahy.Tifrunner.gnm1.ann1.AGW9EK Arachis hypogaea HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
arahy.Tifrunner.gnm1.ann1.M3HJLJ Arachis hypogaea HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
CSS0017136 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
Cpa.g.sc173.6 Carica papaya HOM05D002321 ORTHO05D006445 2.7e-09 65.9 58 63.8
Ciclev10000869m.g Citrus clementina HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
COL.COLO4_31117 Corchorus olitorius HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
Dinv29637 Davidia involucrata HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
Migut.B00717 Erythranthe guttata HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
FvH4_5g27690 Fragaria vesca HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
FAN04G1883 Fragaria x ananassa HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
FAN08G1447 Fragaria x ananassa HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
FAN13G2899 Fragaria x ananassa HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
FAN18G0084 Fragaria x ananassa HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
Lj9A259T47 Lonicera japonica HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
Lj4g0019033 Lotus japonicus HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
Manes.07G030900 Manihot esculenta HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
Oeu016640.1 Olea europaea HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
Prupe.1G585900 Prunus persica HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
RcHm_v2.0_Chr7g0219391 Rosa chinensis HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
Sed0026062 Sechium edule HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
Sc03g0005760 Simmondsia chinensis HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
SGA_v2.0_scaffold131G34422 Striga asiatica HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
THA.LOC104809044 Tarenaya hassleriana HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
THA.LOC104824539 Tarenaya hassleriana HOM05D002321 ORTHO05D006445 2.7e-09 65.9 38 84.2
Lalb_Chr12g0195871 Lupinus albus HOM05D002321 ORTHO05D006445 3.5e-09 65.5 38 81.6
MD08G1248500 Malus domestica HOM05D002321 ORTHO05D006445 3.5e-09 65.5 38 81.6
PSO210G3878 Papaver somniferum HOM05D002321 ORTHO05D006445 3.5e-09 65.5 38 81.6
PSO447G0115 Papaver somniferum HOM05D002321 ORTHO05D006445 3.5e-09 65.5 38 81.6
MD15G1443300 Malus domestica HOM05D002321 ORTHO05D006445 4.6e-09 65.1 38 81.6
Manes.10G106100 Manihot esculenta HOM05D002321 ORTHO05D006445 4.6e-09 65.1 38 81.6
Duzib192G0835 Durio zibethinus HOM05D002321 ORTHO05D006445 6.1e-09 64.7 38 81.6
vmacro19825 Vaccinium macrocarpon HOM05D002321 ORTHO05D006445 6.1e-09 64.7 38 81.6
VMungo1215G1402 Vigna mungo HOM05D002321 ORTHO05D006445 6.1e-09 64.7 38 81.6
Aa31sc221G80 Aethionema arabicum HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
Aqoxy6G00020 Aquilegia oxysepala HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
AL8G23790 Arabidopsis lyrata HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
AT5G49820 Arabidopsis thaliana HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
Carub.0008s0970 Capsella rubella HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
CARHR258950 Cardamine hirsuta HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
ClCG05G014590 Citrullus lanatus HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
ClCG10G007500 Citrullus lanatus HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
MELO3C016450.2 Cucumis melo HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
CsaV3_3G006710 Cucumis sativus L. HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
Thhalv10013323m.g Eutrema salsugineum HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
Gohir.D02G105400 Gossypium hirsutum HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
Gorai.005G119600 Gossypium raimondii HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
MBI03_g34265_MAGBIO Magnolia biondii HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
Medtr4g134590 Medicago truncatula HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
Sp6g11270 Schrenkiella parvula HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
Sed0020041 Sechium edule HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
TAR381G0422 Trochodendron aralioides HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
TAR381G1352 Trochodendron aralioides HOM05D002321 ORTHO05D006445 7.9e-09 64.3 38 81.6
Actinidia26198 Actinidia chinensis HOM05D002321 ORTHO05D006445 1.0e-08 63.9 38 81.6
Glyma.17G002100 Glycine max HOM05D002321 ORTHO05D006445 1.0e-08 63.9 38 81.6
Nn5g27149 Nelumbo nucifera HOM05D002321 ORTHO05D006445 1.3e-08 63.5 38 78.9
Potri.004G229500 Populus trichocarpa HOM05D002321 ORTHO05D006445 1.3e-08 63.5 38 81.6
Sabra01G0174700 Salix brachista HOM05D002321 ORTHO05D006445 1.3e-08 63.5 38 81.6
Thecc.06G020000 Theobroma cacao HOM05D002321 ORTHO05D006445 1.3e-08 63.5 38 78.9
GSVIVG01023138001 Vitis vinifera HOM05D002321 ORTHO05D006445 1.3e-08 63.5 38 81.6
ATR1089G008 Amborella trichopoda HOM05D002321 ORTHO05D006445 2.3e-08 62.8 38 76.3
CSS0022296 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D006445 2.3e-08 62.8 38 76.3
CiPaw.05G001300 Carya illinoinensis HOM05D002321 ORTHO05D006445 2.3e-08 62.8 38 78.9
Gohir.A03G081200 Gossypium hirsutum HOM05D002321 ORTHO05D006445 2.3e-08 62.8 38 78.9
Hma1.2p1_0157F.1_g069140 Hydrangea macrophylla HOM05D002321 ORTHO05D006445 2.3e-08 62.8 38 78.9
Phvul.003G091200 Phaseolus vulgaris HOM05D002321 ORTHO05D006445 2.3e-08 62.8 38 76.3
QL02p103548 Quercus lobata HOM05D002321 ORTHO05D006445 2.3e-08 62.8 38 78.9
TPR.G5983 Trifolium pratense HOM05D002321 ORTHO05D006445 2.3e-08 62.8 38 78.9
Glyma.07G272200 Glycine max HOM05D002321 ORTHO05D006445 3.0e-08 62.4 38 78.9
Psat4g002680 Pisum sativum HOM05D002321 ORTHO05D006445 3.0e-08 62.4 38 78.9
EL10Ac6g13971 Beta vulgaris HOM05D002321 ORTHO05D006445 3.9e-08 62.0 38 78.9
BcaB05g24065 Brassica carinata HOM05D002321 ORTHO05D006445 3.9e-08 62.0 38 78.9
CDE07G1618 Ceratophyllum demersum HOM05D002321 ORTHO05D006445 3.9e-08 62.0 38 78.9
Eucgr.G00067 Eucalyptus grandis HOM05D002321 ORTHO05D006445 3.9e-08 62.0 38 76.3
HanXRQChr09g0248771 Helianthus annuus HOM05D002321 ORTHO05D006445 3.9e-08 62.0 38 78.9
Lj5A285T49 Lonicera japonica HOM05D002321 ORTHO05D006445 3.9e-08 62.0 38 76.3
TWI59G0552 Tripterygium wilfordii HOM05D002321 ORTHO05D006445 3.9e-08 62.0 38 73.7
Atru.chr6.213 Acer truncatum HOM05D002321 ORTHO05D006445 6.7e-08 61.2 38 76.3
MBI06_g43030_MAGBIO Magnolia biondii HOM05D002321 ORTHO05D006445 6.7e-08 61.2 38 76.3
Medtr4g077650 Medicago truncatula HOM05D002321 ORTHO05D006445 6.7e-08 61.2 38 76.3
BcaB01g02869 Brassica carinata HOM05D002321 ORTHO05D006445 8.7e-08 60.8 38 76.3
Ca_13527_v3 Cicer arietinum L. HOM05D002321 ORTHO05D006445 8.7e-08 60.8 35 82.9
ECA238G2920 Erigeron canadensis HOM05D002321 ORTHO05D006445 8.7e-08 60.8 38 76.3
Lsat_1_v5_gn_9_124960 Lactuca sativa HOM05D002321 ORTHO05D006445 8.7e-08 60.8 38 76.3
Ah.02g128460 Amaranthus hybridus HOM05D002321 ORTHO05D006445 1.1e-07 60.5 38 76.3
Ah.03g136750 Amaranthus hybridus HOM05D002321 ORTHO05D006445 1.1e-07 60.5 38 76.3
BcaC03g14664 Brassica carinata HOM05D002321 ORTHO05D006445 1.1e-07 60.5 38 76.3
A02p12920 Brassica napus HOM05D002321 ORTHO05D006445 1.1e-07 60.5 38 76.3
C02p20990 Brassica napus HOM05D002321 ORTHO05D006445 1.1e-07 60.5 38 76.3
BolC2t08242H Brassica oleracea HOM05D002321 ORTHO05D006445 1.1e-07 60.5 38 76.3
BraA02t06346Z Brassica rapa HOM05D002321 ORTHO05D006445 1.1e-07 60.5 38 76.3
AUR62040128 Chenopodium quinoa HOM05D002321 ORTHO05D006445 1.1e-07 60.5 38 73.7
AUR62042961 Chenopodium quinoa HOM05D002321 ORTHO05D006445 1.1e-07 60.5 38 73.7
Cc02_g23720 Coffea canephora HOM05D002321 ORTHO05D006445 1.1e-07 60.5 38 76.3
Cfa004434 Carpinus fangiana HOM05D002321 ORTHO05D006445 1.5e-07 60.1 38 76.3
Haze_09974 Corylus avellana HOM05D002321 ORTHO05D006445 1.5e-07 60.1 38 76.3
HPP92_019419 Vanilla planifolia HOM05D002321 ORTHO05D006445 1.5e-07 60.1 38 73.7
Nitab4.5_0000460g0050 Nicotiana tabacum HOM05D002321 ORTHO05D006445 1.9e-07 59.7 38 76.3
Nitab4.5_0010848g0010 Nicotiana tabacum HOM05D002321 ORTHO05D006445 1.9e-07 59.7 38 76.3
SHI04996 Sapria himalayana HOM05D002321 ORTHO05D000001 1.9e-07 59.7 38 76.3
Solyc10g008560.3 Solanum lycopersicum HOM05D002321 ORTHO05D006445 1.9e-07 59.7 38 76.3
Sopen10g004370 Solanum pennellii HOM05D002321 ORTHO05D006445 1.9e-07 59.7 38 76.3
PGSC0003DMG400021663 Solanum tuberosum HOM05D002321 ORTHO05D006445 1.9e-07 59.7 38 76.3
CSS0022931 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D006445 2.5e-07 59.3 38 78.9
CSS0027899 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D006445 2.5e-07 59.3 38 78.9
CAN.G168.25 Capsicum annuum HOM05D002321 ORTHO05D006445 2.5e-07 59.3 38 76.3
unitig_26.g9009 Utricularia gibba HOM05D002321 ORTHO05D006445 3.3e-07 58.9 38 73.7
Mapoly0083s0024 Marchantia polymorpha HOM05D002321 ORTHO05D006445 4.3e-07 58.5 38 76.3
Peaxi162Scf00000g00067 Petunia axillaris HOM05D002321 ORTHO05D006445 4.3e-07 58.5 38 73.7
Pp3c6_25980 Physcomitrium patens HOM05D002321 ORTHO05D006445 4.3e-07 58.5 38 73.7
QL02p065019 Quercus lobata HOM05D002321 ORTHO05D006445 4.3e-07 58.5 38 73.7
PGR042G0050 Punica granatum HOM05D002321 ORTHO05D006445 5.7e-07 58.2 38 73.7
unitig_749.g14114 Utricularia gibba HOM05D002321 ORTHO05D006445 5.7e-07 58.2 38 71.1
CSS0014792 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D006445 9.7e-07 57.4 28 96.4
Pp3c5_3000 Physcomitrium patens HOM05D002321 ORTHO05D006445 1.3e-06 57.0 38 71.1
Peaxi162Scf00071g00002 Petunia axillaris HOM05D002321 ORTHO05D006445 1.6e-06 56.6 38 71.1
Zm00001eb288290 Zea mays HOM05D002321 ORTHO05D006445 4.8e-06 55.1 38 65.8
CSS0020429 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D006445 6.3e-06 54.7 28 89.3
SEGI_38877 Sequoiadendron giganteum HOM05D002321 ORTHO05D006445 6.3e-06 54.7 38 65.8


User provided reference genes

Program Settings