Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.1e-296 1021.5 500 100.0
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.4e-255 885.2 434 98.4
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 9.4e-244 846.7 493 83.2
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 2.5e-236 822.0 497 81.1
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.1e-228 796.6 491 79.8
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 7.2e-228 793.9 475 80.2
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.7e-227 791.2 592 69.1
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 6.3e-224 780.8 495 76.0
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 5.3e-223 777.7 485 76.3
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 2.3e-218 762.3 492 74.2
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 3.4e-217 758.4 489 74.0
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 2.8e-216 755.4 489 73.8
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 4.8e-216 754.6 491 74.5
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.3e-216 754.2 479 74.3
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.3e-216 754.2 479 74.3
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 8.3e-216 753.8 477 74.6
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 8.3e-216 753.8 495 72.5
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 1.1e-215 753.4 479 74.3
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.1e-215 751.9 479 74.1
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 7.0e-215 750.7 412 87.9
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 7.0e-215 750.7 490 74.3
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 7.0e-215 750.7 491 74.5
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.2e-214 750.0 493 74.2
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.7e-214 748.8 475 75.2
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 7.7e-214 747.3 480 74.6
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 7.7e-214 747.3 479 73.7
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 6.6e-213 744.2 487 74.1
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 8.6e-213 743.8 504 71.8
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 8.6e-213 743.8 498 71.9
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 8.6e-213 743.8 476 74.6
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.5e-212 743.0 475 73.7
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 3.3e-212 741.9 496 70.0
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 4.2e-212 741.5 487 73.3
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.8e-211 738.8 496 69.8
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 2.8e-211 738.8 497 73.4
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 6.1e-211 737.6 469 75.5
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 8.0e-211 737.3 511 69.1
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 8.0e-211 737.3 496 71.4
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.0e-210 736.9 496 69.8
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.4e-210 736.5 488 73.6
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 5.2e-210 734.6 469 74.6
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.2e-209 733.4 462 76.4
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 7.5e-209 730.7 422 82.5
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 2.2e-208 729.2 461 74.8
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 1.8e-207 726.1 470 73.0
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 2.4e-207 725.7 470 74.0
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 4.1e-207 724.9 501 68.3
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 5.4e-207 724.5 488 71.3
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 5.4e-207 724.5 467 74.7
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 7.0e-207 724.2 525 68.6
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 7.0e-207 724.2 521 71.2
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.2e-206 723.4 463 75.8
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.2e-206 723.4 470 74.0
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 2.0e-206 722.6 492 69.3
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 2.7e-206 722.2 501 68.3
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 5.9e-206 721.1 499 69.5
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 5.9e-206 721.1 499 69.7
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.9e-206 721.1 522 69.0
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 7.8e-206 720.7 496 70.8
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.3e-205 719.9 493 72.0
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.7e-205 719.5 491 69.5
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.3e-205 719.2 495 71.3
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 2.3e-205 719.2 499 69.5
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 5.0e-205 718.0 493 71.2
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 1.5e-204 716.5 497 68.6
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.5e-204 716.5 492 69.9
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 4.3e-204 714.9 460 74.1
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.6e-204 714.5 386 88.1
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 3.6e-203 711.8 451 72.1
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 6.1e-203 711.1 497 68.0
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 2.3e-202 709.1 485 69.5
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 4.0e-202 708.4 487 70.2
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 4.0e-202 708.4 464 72.4
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 6.8e-202 707.6 470 73.6
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 8.9e-202 707.2 460 73.5
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.4e-201 705.3 497 69.2
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 4.4e-201 704.9 486 69.1
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.1e-199 700.3 485 70.7
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.4e-199 699.9 529 65.6
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 4.6e-198 694.9 493 67.3
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.7e-197 693.0 472 69.9
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 3.0e-197 692.2 480 69.6
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 3.9e-197 691.8 498 67.5
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 5.0e-197 691.4 491 69.2
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.9e-196 689.5 460 70.2
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 2.8e-195 685.6 488 66.2
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 4.7e-195 684.9 488 66.2
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.4e-194 683.3 488 65.8
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.4e-194 683.3 444 71.8
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 3.1e-194 682.2 460 70.7
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 5.2e-194 681.4 498 66.9
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 8.9e-194 680.6 525 64.0
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 5.8e-193 677.9 472 67.6
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 5.8e-193 677.9 491 67.0
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.9e-192 674.9 480 65.4
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 8.3e-192 674.1 497 67.0
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.2e-190 670.2 475 66.5
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 6.0e-190 667.9 473 66.6
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.9e-189 665.2 473 67.9
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 3.9e-189 665.2 426 74.6
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 3.3e-188 662.1 492 67.3
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 9.5e-188 660.6 479 65.1
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.8e-187 659.1 472 67.6
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 2.3e-186 656.0 486 66.7
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 4.0e-186 655.2 489 63.8
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.4e-185 652.1 512 63.1
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 4.4e-185 651.7 479 64.5
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 7.5e-185 651.0 465 65.8
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 7.5e-185 651.0 465 65.8
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 7.5e-185 651.0 465 65.8
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 2.9e-184 649.0 479 64.3
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 4.9e-184 648.3 479 64.1
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 8.3e-184 647.5 479 64.1
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 1.1e-183 647.1 472 65.9
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.4e-183 646.7 479 64.1
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.9e-183 646.4 499 64.7
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 5.4e-183 644.8 524 61.8
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.2e-183 644.0 644 54.3
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.1e-182 642.9 475 66.1
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 7.8e-182 641.0 465 64.7
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.5e-180 636.7 510 61.0
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 2.5e-180 636.0 472 64.4
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 6.2e-179 631.3 511 61.4
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 1.1e-178 630.6 567 57.0
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.7e-174 615.9 469 64.2
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.7e-173 613.2 498 62.2
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 4.0e-170 602.1 466 63.3
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 6.9e-170 601.3 416 66.1
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 2.0e-169 599.7 444 65.3
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.9e-168 595.1 503 60.2
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.0e-165 585.9 439 66.3
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 8.1e-163 577.8 428 66.1
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.4e-160 568.2 487 60.2
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.1e-156 557.4 377 74.0
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 4.5e-153 545.4 497 54.5
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.4e-145 519.2 469 57.1
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 4.5e-145 518.8 333 75.1
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.2e-142 510.8 474 55.7
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 2.6e-137 493.0 517 48.7
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.8e-133 480.3 465 51.0
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 1.6e-126 457.2 481 48.4
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.2e-120 436.8 406 52.0
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 2.4e-114 416.8 343 60.6
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.9e-111 407.1 522 42.5
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.0e-109 401.4 271 74.5
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 2.4e-90 337.0 320 52.5
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.4e-82 309.3 215 67.9
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.3e-71 273.5 221 62.4
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 8.4e-59 232.3 219 56.2
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 7.3e-47 192.6 159 58.5
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 2.7e-41 174.1 101 82.2
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 5.6e-39 166.4 106 71.7
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 2.8e-38 164.1 317 32.5
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 3.5e-33 147.1 112 68.8
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 6.0e-33 146.4 112 68.8
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.3e-32 145.2 149 52.3
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 1.8e-32 144.8 113 60.2
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 3.0e-32 144.1 440 29.8
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.7e-27 128.3 81 71.6
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 5.0e-27 126.7 83 69.9
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.4e-26 125.2 86 66.3
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 2.7e-25 120.9 99 55.6
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.6e-22 111.7 112 59.8
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.4e-21 108.6 71 69.0
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.5e-18 97.8 62 71.0
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 5.1e-16 90.1 67 68.7
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.7e-14 85.1 48 83.3
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.8e-14 84.3 61 65.6
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 5.3e-13 80.1 71 56.3
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 1.5e-12 78.6 71 56.3
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.5e-10 71.2 45 71.1
ATR0681G284 Amborella trichopoda HOM05D003877 ORTHO05D038325 5.1e-08 63.5 71 40.8
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 7.4e-07 59.7 38 71.1
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 9.7e-07 59.3 53 43.4
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 2.2e-06 58.2 53 56.6
PSO063G3403 Papaver somniferum HOM05D000240 ORTHO05D002721 4.8e-06 57.0 59 40.7
PSO017G6761 Papaver somniferum HOM05D000240 ORTHO05D004647 8.2e-06 56.2 59 39.0


User provided reference genes

Program Settings