Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.1e-281 971.1 471 100.0
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.0e-240 835.5 477 86.0
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.4e-235 818.1 475 84.4
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.6e-224 782.7 475 80.4
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 6.0e-224 780.8 477 78.8
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 2.0e-219 765.8 475 79.2
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 2.3e-215 752.3 476 76.5
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 4.7e-213 744.6 485 76.1
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 8.1e-213 743.8 479 75.8
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 2.3e-212 742.3 479 75.4
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 2.0e-211 739.2 477 75.5
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 7.5e-211 737.3 479 74.9
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 7.5e-211 737.3 482 74.7
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 7.5e-211 737.3 479 74.5
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.2e-210 735.7 477 77.8
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.2e-210 735.7 482 74.1
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 3.7e-210 734.9 475 74.7
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 6.4e-210 734.2 479 75.2
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 8.3e-210 733.8 475 75.2
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.9e-209 732.6 479 75.2
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 2.7e-208 728.8 475 74.5
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 7.8e-208 727.2 483 74.9
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.0e-207 726.9 479 74.9
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 3.9e-207 724.9 500 71.8
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 5.1e-207 724.5 484 74.8
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.6e-207 724.2 478 74.5
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 6.6e-207 724.2 478 74.3
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.5e-206 723.0 484 72.5
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.9e-206 722.6 477 73.6
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.3e-206 720.7 478 74.3
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 9.5e-206 720.3 476 74.6
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 9.5e-206 720.3 484 74.8
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.5e-206 720.3 477 73.6
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 4.7e-205 718.0 479 74.3
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 6.2e-205 717.6 479 74.3
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 3.1e-204 715.3 483 71.4
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 3.1e-204 715.3 480 72.5
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 4.4e-203 711.4 479 72.9
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 4.4e-203 711.4 478 73.8
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 7.6e-203 710.7 478 73.2
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.4e-201 706.4 520 67.7
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 1.9e-201 706.1 518 68.1
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 4.1e-201 704.9 480 72.9
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 4.1e-201 704.9 518 67.8
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 9.2e-201 703.7 518 67.8
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.2e-200 703.4 519 68.2
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 1.6e-200 703.0 474 71.9
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.6e-200 703.0 484 73.3
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 2.1e-200 702.6 482 73.4
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 2.7e-200 702.2 480 72.3
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.7e-200 702.2 477 72.1
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 6.0e-200 701.0 478 71.3
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 7.8e-200 700.7 482 72.0
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 7.8e-200 700.7 432 77.5
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.9e-199 698.4 478 70.9
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 6.6e-199 697.6 475 71.2
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 6.6e-199 697.6 482 71.4
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.5e-198 696.4 542 66.6
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.5e-198 696.4 482 72.8
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.6e-197 693.0 518 68.0
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.6e-197 693.0 482 71.4
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 4.7e-197 691.4 528 66.7
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 6.2e-197 691.0 486 72.0
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 6.2e-197 691.0 482 71.0
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 6.2e-197 691.0 476 71.0
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.1e-196 690.3 482 72.0
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.8e-196 689.5 486 69.5
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 5.2e-196 688.0 543 63.7
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 1.3e-194 683.3 501 68.7
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.7e-194 682.9 477 69.4
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 8.4e-194 680.6 478 70.9
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.4e-193 679.9 478 69.5
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 1.2e-192 676.8 387 85.3
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.5e-192 675.2 518 66.2
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.3e-191 673.3 499 68.9
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.7e-191 672.9 516 66.3
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 5.1e-191 671.4 476 71.2
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 2.6e-187 659.1 476 68.7
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 2.9e-186 655.6 435 72.9
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 8.4e-186 654.1 475 66.9
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 2.4e-185 652.5 482 68.5
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.2e-184 650.2 477 66.2
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 7.9e-184 647.5 482 67.4
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-183 646.7 434 71.9
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.8e-183 646.4 484 68.0
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.1e-182 643.7 483 66.3
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 7.4e-182 641.0 387 81.7
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 2.8e-181 639.0 436 71.3
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 6.9e-180 634.4 482 65.4
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 2.0e-179 632.9 476 65.5
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.0e-179 632.9 386 79.5
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 8.4e-178 627.5 479 65.6
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 1.9e-177 626.3 485 64.7
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.5e-177 624.8 481 66.3
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 5.5e-177 624.8 475 64.4
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 9.3e-177 624.0 481 66.3
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.5e-176 622.1 486 64.4
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 7.9e-176 620.9 477 64.4
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.8e-175 619.8 477 64.6
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 6.7e-175 617.8 477 64.4
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.5e-174 615.9 475 64.0
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.4e-172 610.1 475 63.6
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 2.4e-172 609.4 475 63.6
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 4.0e-172 608.6 476 64.1
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 1.2e-171 607.1 481 64.0
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 2.6e-171 605.9 475 62.9
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 2.6e-171 605.9 475 62.9
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 2.6e-171 605.9 476 63.2
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 3.4e-171 605.5 476 63.0
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 7.6e-171 604.4 477 62.9
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.3e-170 603.6 476 62.2
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.9e-169 599.7 472 63.1
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 4.6e-168 595.1 474 62.2
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 8.7e-167 590.9 398 73.4
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.1e-166 590.5 391 73.9
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 6.1e-160 568.2 436 66.3
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.5e-158 562.8 455 62.6
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 5.3e-156 555.1 396 69.2
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 6.9e-156 554.7 434 63.8
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.2e-153 545.8 495 55.8
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.1e-152 543.1 405 68.1
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 7.9e-152 541.2 437 63.8
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.0e-151 540.8 346 74.9
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 4.4e-150 535.4 497 56.1
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 8.2e-149 531.2 292 84.9
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 5.5e-145 518.5 478 57.3
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 8.0e-144 514.6 511 53.4
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 2.6e-142 509.6 285 83.2
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 1.2e-139 500.7 399 61.2
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 5.0e-138 495.4 289 81.3
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 8.5e-138 494.6 457 56.9
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 7.0e-132 474.9 308 69.8
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.6e-126 456.4 304 70.4
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.5e-113 414.1 289 66.8
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 7.3e-113 411.8 412 52.4
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 6.1e-112 408.7 293 67.6
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 1.8e-111 407.1 530 44.3
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.7e-106 390.6 296 70.3
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 2.3e-106 390.2 292 64.4
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.8e-103 380.6 305 58.7
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.7e-101 374.0 539 41.6
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 7.0e-100 368.6 391 47.8
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 8.4e-85 318.5 376 49.2
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.7e-69 267.7 430 40.0
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 4.2e-68 263.1 207 64.3
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 2.5e-65 253.8 188 68.1
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.6e-51 206.5 181 60.2
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 2.6e-46 190.7 233 48.1
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.5e-41 174.9 152 59.9
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.7e-41 172.9 95 83.2
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.8e-40 169.9 93 82.8
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.1e-39 168.7 144 58.3
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.1e-39 168.7 144 58.3
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.8e-39 167.9 95 81.1
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.2e-38 165.2 188 52.1
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.6e-38 164.1 128 56.2
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.3e-37 161.8 140 63.6
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 5.1e-34 149.8 178 47.8
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 6.7e-34 149.4 108 68.5
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 2.6e-33 147.5 88 79.5
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 2.6e-33 147.5 88 79.5
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 5.3e-31 139.8 153 51.6
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 1.0e-29 135.6 171 43.3
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.5e-28 131.7 136 52.9
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.2e-14 85.5 66 65.2
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.3e-13 82.0 45 82.2


User provided reference genes

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