Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042665 Camellia sinensis var. sinensis HOM05D008360 ORTHO05D010532 9.5e-29 129.4 62 100.0
Dinv34381 Davidia involucrata HOM05D008360 ORTHO05D010532 1.0e-14 82.8 59 67.8
Manes.09G007500 Manihot esculenta HOM05D008360 ORTHO05D010532 2.3e-14 81.6 46 76.1
Solyc04g040000.2 Solanum lycopersicum HOM05D008360 ORTHO05D010532 2.3e-14 81.6 56 64.3
Hma1.2p1_1048F.1_g251690 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 6.6e-14 80.1 46 80.4
Hund24629 Selenicereus undatus HOM05D008360 ORTHO05D010532 8.6e-14 79.7 48 72.9
Duzib093G1186 Durio zibethinus HOM05D008360 ORTHO05D010532 1.1e-13 79.3 46 71.7
Prupe.7G043000 Prunus persica HOM05D008360 ORTHO05D010532 1.5e-13 79.0 46 71.7
Duzib106G1984 Durio zibethinus HOM05D008360 ORTHO05D010532 5.6e-13 77.0 42 76.2
CAN.G1237.40 Capsicum annuum HOM05D008360 ORTHO05D010532 7.3e-13 76.6 46 71.7
CiPaw.09G045700 Carya illinoinensis HOM05D008360 ORTHO05D010532 9.5e-13 76.3 46 71.7
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 2.1e-12 75.1 45 71.1
Manes.08G057500 Manihot esculenta HOM05D008360 ORTHO05D010532 2.1e-12 75.1 46 71.7
Nitab4.5_0002162g0190 Nicotiana tabacum HOM05D008360 ORTHO05D010532 2.8e-12 74.7 44 70.5
Thecc.05G140600 Theobroma cacao HOM05D008360 ORTHO05D010532 2.8e-12 74.7 46 69.6
unitig_8.g3490 Utricularia gibba HOM05D008360 ORTHO05D010532 2.8e-12 74.7 48 66.7
AUR62031993 Chenopodium quinoa HOM05D000009 ORTHO05D000008 3.6e-12 74.3 47 63.8
RcHm_v2.0_Chr3g0476891 Rosa chinensis HOM05D008360 ORTHO05D010532 3.6e-12 74.3 42 78.6
RcHm_v2.0_Chr3g0476991 Rosa chinensis HOM05D008360 ORTHO05D010532 8.1e-12 73.2 51 68.6
Potri.016G038300 Populus trichocarpa HOM05D008360 ORTHO05D010532 1.4e-11 72.4 46 69.6
COL.COLO4_37957 Corchorus olitorius HOM05D008360 ORTHO05D010532 2.3e-11 71.6 46 67.4
FAN09G2365 Fragaria x ananassa HOM05D008360 ORTHO05D010532 3.1e-11 71.2 42 71.4
FAN14G5043 Fragaria x ananassa HOM05D008360 ORTHO05D010532 3.1e-11 71.2 42 71.4
Cc06_g18840 Coffea canephora HOM05D008360 ORTHO05D010532 4.0e-11 70.9 46 65.2
Actinidia17687 Actinidia chinensis HOM05D008360 ORTHO05D010532 2.6e-10 68.2 39 76.9
Migut.J01675 Erythranthe guttata HOM05D008360 ORTHO05D010532 3.4e-10 67.8 48 60.4
Migut.K00128 Erythranthe guttata HOM05D008360 ORTHO05D010532 3.4e-10 67.8 42 71.4
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 5.8e-10 67.0 36 80.6
Gohir.A09G118500 Gossypium hirsutum HOM05D008360 ORTHO05D010532 1.3e-09 65.9 46 65.2
Gohir.D09G115400 Gossypium hirsutum HOM05D008360 ORTHO05D010532 1.3e-09 65.9 46 65.2
Gorai.006G133100 Gossypium raimondii HOM05D008360 ORTHO05D010532 1.3e-09 65.9 46 65.2
arahy.Tifrunner.gnm1.ann1.LHUB84 Arachis hypogaea HOM05D008360 ORTHO05D010532 1.7e-09 65.5 48 58.3
THA.LOC104824413 Tarenaya hassleriana HOM05D008360 ORTHO05D010532 2.2e-09 65.1 46 56.5
Potri.006G041600 Populus trichocarpa HOM05D008360 ORTHO05D010532 8.3e-09 63.2 46 58.7
Carub.0005s2387 Capsella rubella HOM05D008360 ORTHO05D010532 1.1e-08 62.8 46 58.7
CARHR167260 Cardamine hirsuta HOM05D008360 ORTHO05D010532 1.1e-08 62.8 46 58.7
Lj1g0003695 Lotus japonicus HOM05D008360 ORTHO05D010532 1.9e-08 62.0 48 54.2
Phvul.001G125600 Phaseolus vulgaris HOM05D008360 ORTHO05D010532 1.9e-08 62.0 46 58.7
A09p49990 Brassica napus HOM05D008360 ORTHO05D010532 2.4e-08 61.6 46 58.7
C08p32400 Brassica napus HOM05D008360 ORTHO05D010532 2.4e-08 61.6 46 58.7
BolC8t50854H Brassica oleracea HOM05D008360 ORTHO05D010532 2.4e-08 61.6 46 58.7
BraA09t40449Z Brassica rapa HOM05D008360 ORTHO05D010532 2.4e-08 61.6 46 58.7
Thhalv10006358m.g Eutrema salsugineum HOM05D008360 ORTHO05D010532 2.4e-08 61.6 46 58.7
AL5G38550 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 3.2e-08 61.2 46 56.5
AT3G57062 Arabidopsis thaliana HOM05D008360 ORTHO05D010532 3.2e-08 61.2 46 56.5
Medtr7g090260 Medicago truncatula HOM05D008360 ORTHO05D010532 2.1e-07 58.5 46 56.5
Aa31LG10G11990 Aethionema arabicum HOM05D008360 ORTHO05D010532 2.7e-07 58.2 46 54.3
Sabra06G0028300 Salix brachista HOM05D008360 ORTHO05D010532 4.6e-07 57.4 44 54.5
PSO384G3670 Papaver somniferum HOM05D008360 ORTHO05D010532 1.0e-06 56.2 46 56.5
Hma1.2p1_1048F.1_g251680 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 3.0e-06 54.7 46 58.7
Lalb_Chr25g0286871 Lupinus albus HOM05D008360 ORTHO05D010532 6.6e-06 53.5 46 52.2
BcaC02g12894 Brassica carinata HOM05D008360 ORTHO05D010532 8.6e-06 53.1 46 50.0
Lalb_Chr20g0110161 Lupinus albus HOM05D008360 ORTHO05D010532 8.6e-06 53.1 44 56.8


User provided reference genes

Program Settings