Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 1.6e-188 662.5 312 100.0
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 5.2e-184 647.5 312 98.4
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 4.8e-137 491.5 300 77.7
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 4.3e-130 468.4 301 71.4
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 1.6e-129 466.5 282 77.7
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 3.6e-116 422.2 276 71.0
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 4.6e-116 421.8 278 69.4
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 5.1e-115 418.3 284 68.0
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 6.7e-115 417.9 299 65.2
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 2.6e-114 416.0 284 67.3
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 2.8e-113 412.5 274 69.0
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 3.7e-113 412.1 271 68.6
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 8.2e-113 411.0 279 65.9
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 2.0e-111 406.4 274 67.2
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 1.0e-110 404.1 305 60.0
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 5.0e-110 401.7 292 63.0
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 6.5e-110 401.4 274 67.9
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 6.5e-110 401.4 274 66.4
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 8.5e-110 401.0 274 66.1
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 2.5e-109 399.4 274 67.2
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 7.9e-108 394.4 277 66.1
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 1.0e-107 394.0 275 66.9
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 1.8e-107 393.3 274 66.4
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 1.8e-107 393.3 273 67.0
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 1.8e-107 393.3 274 65.3
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 3.0e-107 392.5 276 65.2
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 8.8e-107 391.0 276 65.9
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 1.5e-106 390.2 279 65.6
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 1.3e-105 387.1 276 65.9
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 8.2e-105 384.4 274 65.0
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 8.2e-105 384.4 285 63.2
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 1.4e-104 383.6 277 63.5
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 3.1e-104 382.5 274 63.5
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 9.1e-104 380.9 276 64.1
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 3.5e-103 379.0 274 63.9
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 7.7e-103 377.9 301 59.5
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 1.0e-102 377.5 282 61.7
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 5.0e-102 375.2 274 63.9
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 2.5e-101 372.9 277 62.1
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 1.6e-100 370.2 282 61.7
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 2.7e-100 369.4 272 64.0
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 1.0e-99 367.5 274 61.7
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 4.0e-99 365.5 270 61.9
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 5.2e-99 365.2 270 61.9
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 3.3e-98 362.5 284 62.0
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 4.4e-98 362.1 270 61.5
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 1.3e-97 360.5 282 60.6
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 4.8e-97 358.6 274 59.5
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 8.2e-97 357.8 274 61.3
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 1.8e-96 356.7 274 62.0
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 3.8e-94 349.0 239 68.6
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 5.0e-94 348.6 281 59.4
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 5.0e-94 348.6 281 59.4
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 5.0e-94 348.6 281 59.4
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 8.5e-94 347.8 287 59.2
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 3.2e-93 345.9 275 58.2
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 5.5e-93 345.1 228 69.3
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 2.7e-92 342.8 281 59.1
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 1.0e-91 340.9 282 58.5
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 1.8e-91 340.1 288 55.9
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 2.0e-90 336.7 283 55.5
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 7.5e-90 334.7 279 55.9
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 5.4e-88 328.6 268 55.2
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 5.4e-88 328.6 227 64.3
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 2.7e-87 326.2 277 55.2
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 7.7e-87 324.7 293 54.9
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 1.0e-86 324.3 302 52.0
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 3.6e-84 315.8 274 55.1
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 6.1e-84 315.1 268 53.4
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 8.0e-84 314.7 274 56.6
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 1.2e-82 310.8 227 62.6
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 1.8e-80 303.5 236 59.7
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 3.8e-78 295.8 313 46.6
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 1.4e-75 287.3 235 57.0
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 2.4e-72 276.6 179 72.6
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 2.0e-71 273.5 181 66.3
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 4.6e-71 272.3 276 47.8
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.0e-70 271.2 331 42.0
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 1.4e-64 250.8 171 71.9
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.9e-64 250.4 191 61.3
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 3.2e-64 249.6 283 43.1
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 2.0e-63 246.9 182 60.4
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 1.7e-62 243.8 281 42.3
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 3.0e-62 243.0 167 68.3
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 3.6e-60 236.1 182 61.0
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 4.3e-53 212.6 191 50.3
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 2.8e-52 209.9 255 42.7
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 3.1e-51 206.5 276 39.5
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 2.7e-47 193.4 234 42.7
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 2.3e-46 190.3 135 60.7
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 2.5e-45 186.8 287 33.8
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.1e-43 179.9 111 68.5
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 2.5e-37 160.2 153 54.2
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 3.3e-37 159.8 133 57.9
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 4.9e-33 146.0 85 78.8
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 8.4e-33 145.2 312 30.4
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 8.1e-28 128.6 74 78.4
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 2.1e-23 114.0 118 44.1
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 1.1e-19 101.7 257 27.2
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 3.9e-14 83.2 80 51.2
TAR636G1493 Trochodendron aralioides HOM05D007318 ORTHO05D009289 1.3e-12 78.2 54 63.0
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.4e-11 73.9 278 23.4
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.0e-10 70.9 245 23.7
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 2.6e-10 70.5 267 23.2
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 7.6e-10 68.9 40 67.5
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 2.2e-09 67.4 169 25.4
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 6.5e-09 65.9 169 25.4
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 6.5e-09 65.9 74 44.6
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 1.1e-08 65.1 185 24.3
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.9e-08 64.3 39 66.7
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 1.9e-08 64.3 184 26.1
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 2.5e-08 63.9 220 24.1
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 2.5e-08 63.9 226 24.8
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 3.2e-08 63.5 248 23.8
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 3.2e-08 63.5 169 24.9
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 3.2e-08 63.5 250 25.6
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 9.3e-08 62.0 159 27.0
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 2.7e-07 60.5 246 23.6
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 4.6e-07 59.7 237 25.3
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 6.1e-07 59.3 162 24.1
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 7.9e-07 58.9 228 25.4
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 7.9e-07 58.9 229 24.0
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.0e-06 58.5 225 23.1
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 1.3e-06 58.2 216 23.6
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.3e-06 58.2 216 23.6
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 1.8e-06 57.8 162 27.2
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 2.3e-06 57.4 180 23.3
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 2.3e-06 57.4 180 23.3
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 2.3e-06 57.4 156 23.7
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 2.3e-06 57.4 218 24.3
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 3.0e-06 57.0 166 26.5
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 3.0e-06 57.0 156 23.7
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 3.9e-06 56.6 225 23.1
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 5.1e-06 56.2 165 24.2
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 5.1e-06 56.2 162 24.1
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 6.7e-06 55.8 144 27.1


User provided reference genes

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