Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042574 Camellia sinensis var. sinensis HOM05D002054 ORTHO05D005362 1.2e-28 129.4 78 100.0
Ciclev10030776m.g Citrus clementina HOM05D002054 ORTHO05D005362 6.6e-19 97.1 78 73.1
Actinidia34712 Actinidia chinensis HOM05D002054 ORTHO05D005362 2.5e-18 95.1 78 73.1
Actinidia31093 Actinidia chinensis HOM05D002054 ORTHO05D005362 1.6e-17 92.4 78 71.8
CiPaw.14G029800 Carya illinoinensis HOM05D002054 ORTHO05D005362 4.7e-17 90.9 78 69.2
QL04p043028 Quercus lobata HOM05D002054 ORTHO05D005362 3.0e-16 88.2 77 70.1
CiPaw.13G037500 Carya illinoinensis HOM05D002054 ORTHO05D005362 5.2e-16 87.4 78 64.1
FAN01G1518 Fragaria x ananassa HOM05D002054 ORTHO05D005362 5.2e-16 87.4 78 69.2
FAN06G2071 Fragaria x ananassa HOM05D002054 ORTHO05D005362 5.2e-16 87.4 78 69.2
FAN10G2249 Fragaria x ananassa HOM05D002054 ORTHO05D005362 5.2e-16 87.4 78 69.2
RcHm_v2.0_Chr1g0332951 Rosa chinensis HOM05D002054 ORTHO05D005362 5.2e-16 87.4 78 69.2
Actinidia18585 Actinidia chinensis HOM05D002054 ORTHO05D005362 8.9e-16 86.7 73 71.2
FAN03G2655 Fragaria x ananassa HOM05D002054 ORTHO05D005362 1.5e-15 85.9 78 67.9
Actinidia06702 Actinidia chinensis HOM05D002054 ORTHO05D005362 2.0e-15 85.5 75 70.7
Nitab4.5_0006653g0050 Nicotiana tabacum HOM05D002054 ORTHO05D005362 3.4e-15 84.7 76 65.8
COL.COLO4_34385 Corchorus olitorius HOM05D002054 ORTHO05D005362 5.7e-15 84.0 77 63.6
Dinv02552 Davidia involucrata HOM05D002054 ORTHO05D005362 5.7e-15 84.0 76 67.1
Thecc.10G103600 Theobroma cacao HOM05D002054 ORTHO05D005362 7.5e-15 83.6 77 62.3
Hma1.2p1_0761F.1_g214310 Hydrangea macrophylla HOM05D002054 ORTHO05D005362 9.8e-15 83.2 79 63.3
Nitab4.5_0008821g0030 Nicotiana tabacum HOM05D002054 ORTHO05D005362 9.8e-15 83.2 76 64.5
vmacro07231 Vaccinium macrocarpon HOM05D002054 ORTHO05D005362 9.8e-15 83.2 74 71.6
MD07G1067100 Malus domestica HOM05D002054 ORTHO05D005362 1.3e-14 82.8 78 65.4
Cc02_g09940 Coffea canephora HOM05D002054 ORTHO05D005362 1.7e-14 82.4 71 70.4
Eucgr.G02706 Eucalyptus grandis HOM05D002054 ORTHO05D005362 1.7e-14 82.4 78 64.1
Prupe.2G084200 Prunus persica HOM05D002054 ORTHO05D005362 4.9e-14 80.9 78 64.1
CAN.G640.25 Capsicum annuum HOM05D002054 ORTHO05D005362 6.3e-14 80.5 76 63.2
Peaxi162Scf00007g00182 Petunia axillaris HOM05D002054 ORTHO05D005362 6.3e-14 80.5 73 64.4
Rhsim03G0104800 Rhododendron simsii HOM05D002054 ORTHO05D005362 6.3e-14 80.5 73 71.2
Sopen07g026750 Solanum pennellii HOM05D002054 ORTHO05D005362 8.3e-14 80.1 76 61.8
Duzib128G0063 Durio zibethinus HOM05D002054 ORTHO05D005362 1.1e-13 79.7 78 59.0
Manes.10G057400 Manihot esculenta HOM05D002054 ORTHO05D005362 1.1e-13 79.7 78 62.8
Solyc07g053190.4 Solanum lycopersicum HOM05D002054 ORTHO05D005362 1.1e-13 79.7 76 61.8
Cfa011246 Carpinus fangiana HOM05D002054 ORTHO05D005362 1.8e-13 79.0 78 60.3
Duzib114G0207 Durio zibethinus HOM05D002054 ORTHO05D005362 1.8e-13 79.0 78 57.7
Migut.F01813 Erythranthe guttata HOM05D002054 ORTHO05D005362 2.4e-13 78.6 75 61.3
MD02G1255000 Malus domestica HOM05D002054 ORTHO05D005362 2.4e-13 78.6 78 62.8
Sp6g38140 Schrenkiella parvula HOM05D002054 ORTHO05D005362 4.1e-13 77.8 78 60.3
Thhalv10012741m.g Eutrema salsugineum HOM05D002054 ORTHO05D005362 7.0e-13 77.0 77 62.3
Lj3A930T58 Lonicera japonica HOM05D002054 ORTHO05D005362 9.2e-13 76.6 76 60.5
Gohir.A10G198200 Gossypium hirsutum HOM05D002054 ORTHO05D005362 1.2e-12 76.3 75 57.3
MSTRG.8169 Avicennia marina HOM05D002054 ORTHO05D005362 2.0e-12 75.5 73 67.1
SalBow3G0957 Salvia bowleyana HOM05D002054 ORTHO05D005362 2.0e-12 75.5 76 59.2
SalBow3G2625 Salvia bowleyana HOM05D002054 ORTHO05D005362 2.0e-12 75.5 76 59.2
SGA_v2.0_scaffold71G24042 Striga asiatica HOM05D002054 ORTHO05D005362 2.0e-12 75.5 76 61.8
ClCG08G008170 Citrullus lanatus HOM05D002054 ORTHO05D005362 2.7e-12 75.1 76 59.2
Haze_02583 Corylus avellana HOM05D002054 ORTHO05D005362 2.7e-12 75.1 72 61.1
Lalb_Chr21g0313271 Lupinus albus HOM05D002054 ORTHO05D005362 2.7e-12 75.1 76 60.5
Gohir.D01G119300 Gossypium hirsutum HOM05D002054 ORTHO05D005362 3.5e-12 74.7 76 60.5
Gorai.002G145600 Gossypium raimondii HOM05D002054 ORTHO05D005362 3.5e-12 74.7 76 60.5
PGR142G4193 Punica granatum HOM05D002054 ORTHO05D005362 3.5e-12 74.7 78 59.0
Cpa.g.sc19.5 Carica papaya HOM05D002054 ORTHO05D005362 4.6e-12 74.3 78 62.8
THA.LOC104816460 Tarenaya hassleriana HOM05D002054 ORTHO05D005362 4.6e-12 74.3 75 64.0
Atru.chr12.979 Acer truncatum HOM05D002054 ORTHO05D005362 5.9e-12 73.9 77 59.7
Sabra08G0016300 Salix brachista HOM05D002054 ORTHO05D005362 5.9e-12 73.9 73 61.6
Ca_26320_v3 Cicer arietinum L. HOM05D002054 ORTHO05D005362 7.8e-12 73.6 78 61.5
PGSC0003DMG400026179 Solanum tuberosum HOM05D002054 ORTHO05D005362 7.8e-12 73.6 68 64.7
TAR633G2241 Trochodendron aralioides HOM05D002054 ORTHO05D005362 7.8e-12 73.6 76 59.2
Potri.010G235900 Populus trichocarpa HOM05D002054 ORTHO05D005362 1.0e-11 73.2 73 58.9
Gohir.D10G205300 Gossypium hirsutum HOM05D002054 ORTHO05D005362 1.3e-11 72.8 78 53.8
Gorai.011G230300 Gossypium raimondii HOM05D002054 ORTHO05D005362 1.3e-11 72.8 78 53.8
Phvul.007G247300 Phaseolus vulgaris HOM05D002054 ORTHO05D005362 1.3e-11 72.8 77 62.3
VMungo0720G2884 Vigna mungo HOM05D002054 ORTHO05D005362 1.3e-11 72.8 77 62.3
Lalb_Chr02g0151451 Lupinus albus HOM05D002054 ORTHO05D005362 1.7e-11 72.4 78 55.1
THA.LOC104823188 Tarenaya hassleriana HOM05D002054 ORTHO05D005362 1.7e-11 72.4 77 61.0
Glyma.02G160100 Glycine max HOM05D002054 ORTHO05D005362 2.3e-11 72.0 77 61.0
Glyma.10G112500 Glycine max HOM05D002054 ORTHO05D005362 2.3e-11 72.0 77 61.0
TAR636G2980 Trochodendron aralioides HOM05D002054 ORTHO05D005362 3.9e-11 71.2 76 60.5
Aa31LG11G5500 Aethionema arabicum HOM05D002054 ORTHO05D005362 8.6e-11 70.1 74 59.5
Gohir.A01G130300 Gossypium hirsutum HOM05D002054 ORTHO05D005362 1.1e-10 69.7 76 57.9
Sed0012473 Sechium edule HOM05D002054 ORTHO05D005362 1.1e-10 69.7 83 55.4
CARHR208630 Cardamine hirsuta HOM05D002054 ORTHO05D005362 1.5e-10 69.3 70 62.9
Oeu014439.1 Olea europaea HOM05D002054 ORTHO05D005362 1.5e-10 69.3 76 55.3
ECA232G0254 Erigeron canadensis HOM05D002054 ORTHO05D005362 3.3e-10 68.2 63 68.3
Sc20g0001250 Simmondsia chinensis HOM05D002054 ORTHO05D005362 3.3e-10 68.2 81 58.0
MELO3C019890.2 Cucumis melo HOM05D002054 ORTHO05D005362 4.3e-10 67.8 76 57.9
Hund06770 Selenicereus undatus HOM05D002054 ORTHO05D005362 4.3e-10 67.8 78 57.7
SGA_v2.0_scaffold122G33235 Striga asiatica HOM05D002054 ORTHO05D005362 4.3e-10 67.8 63 65.1
TWI63G1527 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 5.6e-10 67.4 71 56.3
Psat6g092960 Pisum sativum HOM05D002054 ORTHO05D005362 7.3e-10 67.0 77 58.4
Potri.008G024300 Populus trichocarpa HOM05D002054 ORTHO05D005362 7.3e-10 67.0 78 56.4
TPR.G22707 Trifolium pratense HOM05D002054 ORTHO05D005362 7.3e-10 67.0 78 57.7
Oeu055045.1 Olea europaea HOM05D002054 ORTHO05D005362 1.6e-09 65.9 59 66.1
CsaV3_6G004140 Cucumis sativus L. HOM05D002054 ORTHO05D005362 3.6e-09 64.7 77 54.5
Sabra10G0183000 Salix brachista HOM05D002054 ORTHO05D005362 4.7e-09 64.3 73 54.8
C02p02010 Brassica napus HOM05D002054 ORTHO05D005362 6.2e-09 63.9 75 56.0
BolC2t06158H Brassica oleracea HOM05D002054 ORTHO05D005362 6.2e-09 63.9 75 56.0
Lj5g0007986 Lotus japonicus HOM05D002054 ORTHO05D005362 8.0e-09 63.5 78 57.7
TWI38G0197 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 8.0e-09 63.5 75 54.7
arahy.Tifrunner.gnm1.ann1.9TB0NK Arachis hypogaea HOM05D002054 ORTHO05D005362 1.0e-08 63.2 80 53.8
arahy.Tifrunner.gnm1.ann1.KWLN2P Arachis hypogaea HOM05D002054 ORTHO05D005362 1.0e-08 63.2 80 53.8
BcaC03g12936 Brassica carinata HOM05D002054 ORTHO05D005362 1.0e-08 63.2 75 56.0
BraA02t04821Z Brassica rapa HOM05D002054 ORTHO05D005362 1.0e-08 63.2 75 56.0
GSVIVG01034750001 Vitis vinifera HOM05D002054 ORTHO05D005362 1.0e-08 63.2 72 55.6
Sed0015776 Sechium edule HOM05D002054 ORTHO05D005362 1.4e-08 62.8 78 55.1
BcaNung05852 Brassica carinata HOM05D002054 ORTHO05D005362 2.3e-08 62.0 78 53.8
Ah.04g163740 Amaranthus hybridus HOM05D002054 ORTHO05D005362 4.0e-08 61.2 65 61.5
AL6G14290 Arabidopsis lyrata HOM05D002054 ORTHO05D005362 6.8e-08 60.5 61 60.7
Carub.0006s0357 Capsella rubella HOM05D002054 ORTHO05D005362 6.8e-08 60.5 70 54.3
Nn1g08881 Nelumbo nucifera HOM05D002054 ORTHO05D005362 1.5e-07 59.3 76 56.6
Nn1g08893 Nelumbo nucifera HOM05D002054 ORTHO05D005362 1.5e-07 59.3 76 56.6
Aqoxy4G02845 Aquilegia oxysepala HOM05D002054 ORTHO05D005362 2.0e-07 58.9 64 59.4
Hma1.2p1_0007F.1_g005310 Hydrangea macrophylla HOM05D002054 ORTHO05D005362 2.0e-07 58.9 61 54.1
HanXRQChr07g0194201 Helianthus annuus HOM05D002054 ORTHO05D005362 4.4e-07 57.8 69 50.7
AT5G04670 Arabidopsis thaliana HOM05D002054 ORTHO05D005362 5.8e-07 57.4 61 55.7
CANSAT56G0864 Cannabis sativa HOM05D002054 ORTHO05D005362 1.3e-06 56.2 78 50.0
A03p01740 Brassica napus HOM05D002054 ORTHO05D005362 1.7e-06 55.8 80 50.0
BraA03t09549Z Brassica rapa HOM05D002054 ORTHO05D005362 1.7e-06 55.8 80 50.0
Lsat_1_v5_gn_2_105021 Lactuca sativa HOM05D002054 ORTHO05D005362 1.7e-06 55.8 62 59.7
BcaB01g05907 Brassica carinata HOM05D002054 ORTHO05D005362 2.2e-06 55.5 77 49.4
C03p02150 Brassica napus HOM05D002054 ORTHO05D005362 2.2e-06 55.5 77 49.4
BolC3t12767H Brassica oleracea HOM05D002054 ORTHO05D005362 2.2e-06 55.5 77 49.4
Lsat_1_v5_gn_0_7461 Lactuca sativa HOM05D002054 ORTHO05D005362 2.2e-06 55.5 73 49.3
Ca_10503_v3 Cicer arietinum L. HOM05D002054 ORTHO05D005362 2.9e-06 55.1 70 48.6
Lalb_Chr19g0129241 Lupinus albus HOM05D002054 ORTHO05D005362 2.9e-06 55.1 69 52.2
Zm00001eb177940 Zea mays HOM05D002054 ORTHO05D005362 3.7e-06 54.7 64 56.2


User provided reference genes

Program Settings