Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.5e-60 235.3 125 100.0
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.5e-60 235.3 125 100.0
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 4.8e-48 194.5 122 87.7
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 4.8e-48 194.5 123 86.2
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.1e-47 191.8 121 86.0
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 3.1e-47 191.8 122 85.2
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 2.0e-46 189.1 122 86.1
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 4.5e-46 188.0 125 83.2
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 8.5e-45 183.7 122 81.1
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 2.5e-44 182.2 118 83.1
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 4.2e-44 181.4 122 82.8
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 4.2e-44 181.4 122 82.8
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 5.5e-44 181.0 112 83.9
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 5.5e-44 181.0 120 82.5
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 9.4e-44 180.3 118 81.4
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.2e-43 179.9 118 83.1
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.2e-43 179.9 118 83.1
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.2e-43 179.9 120 80.8
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.2e-43 179.9 119 84.0
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.6e-43 179.5 118 82.2
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 2.1e-43 179.1 122 82.8
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.7e-43 178.7 118 82.2
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 2.7e-43 178.7 122 79.5
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.6e-43 178.3 122 82.0
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 4.7e-43 177.9 119 80.7
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 4.7e-43 177.9 120 81.7
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.0e-42 176.8 122 80.3
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.0e-42 176.8 119 79.8
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.8e-42 176.0 119 80.7
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 2.3e-42 175.6 121 79.3
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 2.3e-42 175.6 117 82.1
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 4.0e-42 174.9 120 80.0
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 5.2e-42 174.5 118 78.0
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 5.2e-42 174.5 113 82.3
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 5.2e-42 174.5 118 80.5
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 8.8e-42 173.7 118 78.0
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 8.8e-42 173.7 122 77.9
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 8.8e-42 173.7 122 77.9
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-41 172.9 118 79.7
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 1.5e-41 172.9 122 77.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 2.0e-41 172.6 117 81.2
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 2.0e-41 172.6 119 78.2
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.0e-41 172.6 122 77.0
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.0e-41 172.6 122 77.0
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.6e-41 172.2 117 80.3
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 2.6e-41 172.2 117 80.3
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 3.4e-41 171.8 122 77.0
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 4.4e-41 171.4 118 78.8
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 5.7e-41 171.0 123 75.6
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 7.5e-41 170.6 119 78.2
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 9.8e-41 170.2 118 78.0
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 9.8e-41 170.2 101 87.1
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.3e-40 169.9 105 84.8
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.3e-40 169.9 122 76.2
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.8e-40 168.7 121 77.7
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.8e-40 168.7 116 76.7
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 3.7e-40 168.3 119 75.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 4.8e-40 167.9 120 74.2
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.3e-40 167.5 101 84.2
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 6.3e-40 167.5 106 82.1
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 8.3e-40 167.2 120 73.3
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 8.3e-40 167.2 118 75.4
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-39 166.8 116 76.7
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-39 166.8 116 76.7
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.8e-39 166.0 107 79.4
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 1.8e-39 166.0 100 84.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.8e-39 166.0 100 84.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.8e-39 166.0 100 84.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.8e-39 166.0 100 84.0
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 2.4e-39 165.6 116 75.0
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 3.1e-39 165.2 113 77.0
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 3.1e-39 165.2 118 73.7
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 4.1e-39 164.9 115 76.5
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 4.1e-39 164.9 115 76.5
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 5.4e-39 164.5 122 77.0
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 5.4e-39 164.5 118 75.4
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 7.0e-39 164.1 100 83.0
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 7.0e-39 164.1 117 74.4
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.2e-38 163.3 120 73.3
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 1.2e-38 163.3 123 71.5
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.6e-38 162.9 121 72.7
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.6e-38 162.9 119 73.1
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 2.0e-38 162.5 116 75.9
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 2.0e-38 162.5 125 69.6
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 2.0e-38 162.5 125 72.8
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 2.0e-38 162.5 127 72.4
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 2.7e-38 162.2 115 74.8
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.5e-38 161.8 116 74.1
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.5e-38 161.4 101 81.2
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 5.9e-38 161.0 115 73.9
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 5.9e-38 161.0 115 73.9
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 7.7e-38 160.6 117 73.5
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 7.7e-38 160.6 120 72.5
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 7.7e-38 160.6 122 69.7
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 7.7e-38 160.6 122 69.7
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.0e-37 160.2 102 80.4
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.3e-37 159.8 122 73.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 1.7e-37 159.5 118 72.9
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.7e-37 159.5 125 68.0
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 2.9e-37 158.7 131 68.7
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 3.8e-37 158.3 103 79.6
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 3.8e-37 158.3 124 68.5
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 8.6e-37 157.1 113 75.2
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 1.9e-36 156.0 113 71.7
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 4.2e-36 154.8 120 70.8
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 9.5e-36 153.7 98 78.6
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 9.5e-36 153.7 113 73.5
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 2.8e-35 152.1 113 72.6
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 3.6e-35 151.8 120 69.2
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 8.0e-35 150.6 106 71.7
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 1.8e-34 149.4 127 64.6
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 3.0e-34 148.7 104 77.9
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 8.9e-34 147.1 123 65.9
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 8.9e-34 147.1 107 74.8
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 7.5e-33 144.1 123 67.5
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 9.8e-33 143.7 96 78.1
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.8e-31 139.4 120 65.0
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 4.1e-31 138.3 107 72.9
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 9.2e-31 137.1 85 81.2
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 2.7e-30 135.6 104 73.1
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 2.9e-29 132.1 90 73.3
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 1.9e-28 129.4 103 66.0
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.5e-25 119.8 111 59.5
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.3e-24 116.7 113 56.6
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.9e-24 115.5 86 73.3
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.9e-23 112.8 89 73.0
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.2e-22 110.2 64 84.4
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.2e-22 110.2 67 80.6
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 3.5e-22 108.6 75 73.3
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 3.5e-22 108.6 75 73.3
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.0e-21 107.1 70 77.1
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 5.0e-21 104.8 68 77.9
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 8.6e-21 104.0 69 76.8
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 8.6e-21 104.0 69 76.8
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 4.3e-20 101.7 100 56.0
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 4.4e-17 91.7 74 67.6
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 4.4e-17 91.7 119 52.1
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.3e-16 90.1 57 75.4
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-15 86.7 73 65.8
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.9e-15 86.3 85 58.8
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 2.4e-15 85.9 53 79.2
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.0e-14 81.3 72 65.3
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 6.0e-14 81.3 103 46.6
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 2.5e-12 75.9 91 51.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 3.6e-11 72.0 114 40.4
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 6.2e-11 71.2 82 53.7
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 1.4e-10 70.1 53 67.9
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 2.0e-09 66.2 50 80.0
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 2.6e-09 65.9 122 37.7
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 9.9e-09 63.9 50 74.0
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 1.3e-08 63.5 60 51.7
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 1.7e-08 63.2 37 89.2
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 3.7e-08 62.0 50 72.0
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-07 60.5 74 48.6
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.1e-07 60.5 44 70.5
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.5e-06 55.5 38 71.1
SGA_v2.0_scaffold13G06711 Striga asiatica HOM05D001997 ORTHO05D005560 4.6e-06 55.1 33 75.8


User provided reference genes

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