Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042553 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 1.3e-102 376.3 178 100.0
CSS0047334 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 3.9e-43 178.7 134 70.1
CSS0049052 Camellia sinensis var. sinensis HOM05D004721 ORTHO05D005765 1.5e-42 176.8 134 69.4
Dinv23488 Davidia involucrata HOM05D004721 ORTHO05D005765 1.8e-40 169.9 147 62.6
Actinidia00549 Actinidia chinensis HOM05D004721 ORTHO05D005765 5.3e-40 168.3 147 63.3
Atru.chr5.3082 Acer truncatum HOM05D004721 ORTHO05D005765 6.9e-40 167.9 118 72.0
CiPaw.06G132800 Carya illinoinensis HOM05D004721 ORTHO05D005765 6.9e-40 167.9 147 61.9
Haze_02333 Corylus avellana HOM05D004721 ORTHO05D005765 9.0e-40 167.5 118 71.2
Lj5A193T104 Lonicera japonica HOM05D004721 ORTHO05D005765 9.0e-40 167.5 146 61.6
Aqoxy6G01195 Aquilegia oxysepala HOM05D004721 ORTHO05D005765 1.5e-39 166.8 120 69.2
Cfa005049 Carpinus fangiana HOM05D004721 ORTHO05D005765 1.7e-38 163.3 118 68.6
Oeu020727.1 Olea europaea HOM05D004721 ORTHO05D005765 2.2e-38 162.9 148 58.1
Prupe.8G090900 Prunus persica HOM05D004721 ORTHO05D005765 2.2e-38 162.9 147 60.5
TWI31G1285 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 2.9e-38 162.5 145 59.3
Duzib052G1174 Durio zibethinus HOM05D004721 ORTHO05D005765 4.9e-38 161.8 180 50.0
RcHm_v2.0_Chr6g0265981 Rosa chinensis HOM05D004721 ORTHO05D005765 4.9e-38 161.8 147 59.9
Lj9A377G93 Lonicera japonica HOM05D004721 ORTHO05D005765 8.4e-38 161.0 147 61.2
Nn5g28946 Nelumbo nucifera HOM05D004721 ORTHO05D005765 8.4e-38 161.0 180 50.0
FvH4_2g09630 Fragaria vesca HOM05D004721 ORTHO05D005765 1.1e-37 160.6 147 59.2
MD05G1061200 Malus domestica HOM05D004721 ORTHO05D005765 1.1e-37 160.6 147 59.2
QL11p045210 Quercus lobata HOM05D004721 ORTHO05D005765 1.1e-37 160.6 119 68.9
FAN15G0894 Fragaria x ananassa HOM05D004721 ORTHO05D005765 1.9e-37 159.8 120 66.7
GSVIVG01023826001 Vitis vinifera HOM05D004721 ORTHO05D005765 1.9e-37 159.8 120 67.5
Peaxi162Scf00016g00435 Petunia axillaris HOM05D004721 ORTHO05D005765 2.5e-37 159.5 150 57.3
FAN24G2181 Fragaria x ananassa HOM05D004721 ORTHO05D005765 3.2e-37 159.1 147 58.5
Manes.04G087050 Manihot esculenta HOM05D004721 ORTHO05D005765 3.2e-37 159.1 118 66.1
Cpa.g.sc106.2 Carica papaya HOM05D004721 ORTHO05D005765 5.5e-37 158.3 120 65.8
Migut.B00208 Erythranthe guttata HOM05D004721 ORTHO05D005765 5.5e-37 158.3 150 58.0
Rhsim11G0180400 Rhododendron simsii HOM05D004721 ORTHO05D005765 5.5e-37 158.3 147 59.2
TWI75G0248 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 7.1e-37 157.9 147 57.8
MD10G1068900 Malus domestica HOM05D004721 ORTHO05D005765 9.3e-37 157.5 120 65.8
Lj1g0012947 Lotus japonicus HOM05D004721 ORTHO05D005765 1.2e-36 157.1 118 65.3
Gohir.A03G196800 Gossypium hirsutum HOM05D004721 ORTHO05D005765 1.6e-36 156.8 118 65.3
TAR628G0727 Trochodendron aralioides HOM05D004721 ORTHO05D005765 1.6e-36 156.8 186 50.0
Cfa005051 Carpinus fangiana HOM05D004721 ORTHO05D005765 2.1e-36 156.4 118 65.3
Potri.009G120600 Populus trichocarpa HOM05D004721 ORTHO05D005765 2.1e-36 156.4 118 66.1
PSO339G6113 Papaver somniferum HOM05D004721 ORTHO05D005765 2.7e-36 156.0 120 66.7
TAR628G0683 Trochodendron aralioides HOM05D004721 ORTHO05D005765 2.7e-36 156.0 186 48.9
arahy.Tifrunner.gnm1.ann1.P63ZP0 Arachis hypogaea HOM05D004721 ORTHO05D005765 3.5e-36 155.6 180 48.3
Gorai.005G246000 Gossypium raimondii HOM05D004721 ORTHO05D005765 3.5e-36 155.6 118 65.3
TPR.G32188 Trifolium pratense HOM05D004721 ORTHO05D005765 3.5e-36 155.6 116 65.5
Eucgr.G01697 Eucalyptus grandis HOM05D004721 ORTHO05D005765 4.6e-36 155.2 147 55.8
Lalb_Chr08g0246691 Lupinus albus HOM05D004721 ORTHO05D005765 6.0e-36 154.8 134 60.4
Nn5g29707 Nelumbo nucifera HOM05D004721 ORTHO05D005765 6.0e-36 154.8 118 64.4
Ciclev10028779m.g Citrus clementina HOM05D004721 ORTHO05D005765 7.9e-36 154.5 186 48.4
Gohir.D02G218100 Gossypium hirsutum HOM05D004721 ORTHO05D005765 7.9e-36 154.5 118 65.3
arahy.Tifrunner.gnm1.ann1.VA1NMQ Arachis hypogaea HOM05D004721 ORTHO05D005765 1.0e-35 154.1 134 59.0
Psat5g005400 Pisum sativum HOM05D004721 ORTHO05D005765 1.0e-35 154.1 116 64.7
Glyma.04G009800 Glycine max HOM05D004721 ORTHO05D005765 1.8e-35 153.3 180 48.3
SalBow6G3984 Salvia bowleyana HOM05D004721 ORTHO05D005765 3.0e-35 152.5 150 55.3
arahy.Tifrunner.gnm1.ann1.0UP1AG Arachis hypogaea HOM05D004721 ORTHO05D005765 3.9e-35 152.1 180 47.8
arahy.Tifrunner.gnm1.ann1.IE0TZZ Arachis hypogaea HOM05D004721 ORTHO05D005765 3.9e-35 152.1 180 47.8
HPP92_022533 Vanilla planifolia HOM05D004721 ORTHO05D005765 5.1e-35 151.8 147 54.4
SGA_v2.0_scaffold32G13194 Striga asiatica HOM05D004721 ORTHO05D005765 6.7e-35 151.4 150 56.0
Oeu046144.1 Olea europaea HOM05D004721 ORTHO05D005765 8.7e-35 151.0 147 55.8
Sopen01g052120 Solanum pennellii HOM05D004721 ORTHO05D005765 8.7e-35 151.0 150 55.3
PGSC0003DMG400030950 Solanum tuberosum HOM05D004721 ORTHO05D005765 8.7e-35 151.0 150 56.0
vmacro02078 Vaccinium macrocarpon HOM05D004721 ORTHO05D005765 8.7e-35 151.0 180 49.4
Phvul.009G005100 Phaseolus vulgaris HOM05D004721 ORTHO05D005765 1.1e-34 150.6 118 62.7
Nitab4.5_0005796g0050 Nicotiana tabacum HOM05D004721 ORTHO05D005765 1.9e-34 149.8 150 55.3
VMungo1309G2240 Vigna mungo HOM05D004721 ORTHO05D005765 1.9e-34 149.8 118 62.7
CAN.G1544.7 Capsicum annuum HOM05D004721 ORTHO05D005765 2.5e-34 149.4 118 63.6
Sabra09G0092900 Salix brachista HOM05D004721 ORTHO05D005765 2.5e-34 149.4 118 63.6
Cc02_g17240 Coffea canephora HOM05D004721 ORTHO05D005765 3.3e-34 149.1 132 58.3
Glyma.06G009800 Glycine max HOM05D004721 ORTHO05D005765 3.3e-34 149.1 119 63.9
Solyc01g109930.4 Solanum lycopersicum HOM05D004721 ORTHO05D005765 4.3e-34 148.7 150 54.0
ClCG11G004130 Citrullus lanatus HOM05D004721 ORTHO05D005765 5.7e-34 148.3 118 61.9
Thecc.02G080400 Theobroma cacao HOM05D004721 ORTHO05D005765 5.7e-34 148.3 118 62.7
HanXRQChr03g0069331 Helianthus annuus HOM05D004721 ORTHO05D005765 9.7e-34 147.5 147 54.4
Sed0009940 Sechium edule HOM05D004721 ORTHO05D005765 9.7e-34 147.5 118 63.6
vmacro17459 Vaccinium macrocarpon HOM05D004721 ORTHO05D005765 1.3e-33 147.1 117 62.4
Os07g0191000 Oryza sativa ssp. japonica HOM05D004721 ORTHO05D005765 2.2e-33 146.4 118 60.2
CARHR247630 Cardamine hirsuta HOM05D004721 ORTHO05D005765 3.7e-33 145.6 147 51.7
MELO3C023324.2 Cucumis melo HOM05D004721 ORTHO05D005765 3.7e-33 145.6 116 62.1
CsaV3_2G015040 Cucumis sativus L. HOM05D004721 ORTHO05D005765 3.7e-33 145.6 116 62.1
Zm00001eb333360 Zea mays HOM05D004721 ORTHO05D005765 3.7e-33 145.6 120 57.5
MBI10_g00756_MAGBIO Magnolia biondii HOM05D004721 ORTHO05D005765 4.8e-33 145.2 118 62.7
EL10Ac9g21691 Beta vulgaris HOM05D004721 ORTHO05D005765 8.2e-33 144.4 120 60.0
AT4G39120 Arabidopsis thaliana HOM05D004721 ORTHO05D005765 1.1e-32 144.1 147 51.7
Carub.0007s0100 Capsella rubella HOM05D004721 ORTHO05D005765 1.1e-32 144.1 118 60.2
CDE07G1572 Ceratophyllum demersum HOM05D004721 ORTHO05D005765 1.1e-32 144.1 118 60.2
Ah.01g019120 Amaranthus hybridus HOM05D004721 ORTHO05D005765 1.4e-32 143.7 120 60.0
ECA240G1659 Erigeron canadensis HOM05D004721 ORTHO05D005765 1.4e-32 143.7 118 61.9
ATR1158G041 Amborella trichopoda HOM05D004721 ORTHO05D005765 1.8e-32 143.3 186 45.2
Thhalv10025644m.g Eutrema salsugineum HOM05D004721 ORTHO05D005765 1.8e-32 143.3 118 61.0
AUR62011286 Chenopodium quinoa HOM05D004721 ORTHO05D005765 2.4e-32 142.9 120 60.0
Sc08g0000660 Simmondsia chinensis HOM05D004721 ORTHO05D005765 2.4e-32 142.9 117 61.5
BcaC01g00283 Brassica carinata HOM05D004721 ORTHO05D005765 3.1e-32 142.5 118 60.2
A08p23810 Brassica napus HOM05D004721 ORTHO05D005765 3.1e-32 142.5 118 60.2
C03p77610 Brassica napus HOM05D004721 ORTHO05D005765 3.1e-32 142.5 118 60.2
BolC3t20019H Brassica oleracea HOM05D004721 ORTHO05D005765 3.1e-32 142.5 118 60.2
AL7G11060 Arabidopsis lyrata HOM05D004721 ORTHO05D005765 4.1e-32 142.1 118 60.2
BraA08t34333Z Brassica rapa HOM05D004721 ORTHO05D005765 4.1e-32 142.1 147 51.0
Sp7g36700 Schrenkiella parvula HOM05D004721 ORTHO05D005765 4.1e-32 142.1 118 59.3
Aa31LG6G16140 Aethionema arabicum HOM05D004721 ORTHO05D005765 6.9e-32 141.4 147 51.7
CANSAT11G2513 Cannabis sativa HOM05D004721 ORTHO05D005765 6.9e-32 141.4 147 51.7
Lsat_1_v5_gn_9_107961 Lactuca sativa HOM05D004721 ORTHO05D005765 6.9e-32 141.4 110 65.5
BcaB03g12244 Brassica carinata HOM05D004721 ORTHO05D005765 1.2e-31 140.6 118 59.3
A01p00240 Brassica napus HOM05D004721 ORTHO05D005765 1.2e-31 140.6 147 50.3
BraA01t00031Z Brassica rapa HOM05D004721 ORTHO05D005765 1.2e-31 140.6 147 50.3
Hund00240 Selenicereus undatus HOM05D004721 ORTHO05D005765 1.2e-31 140.6 120 60.0
THA.LOC104807751 Tarenaya hassleriana HOM05D004721 ORTHO05D005765 2.0e-31 139.8 118 60.2
Dinv42038 Davidia involucrata HOM05D004721 ORTHO05D005765 8.5e-30 134.4 171 49.1
C01p00350 Brassica napus HOM05D004721 ORTHO05D005765 2.5e-29 132.9 125 56.8
BolC1t00041H Brassica oleracea HOM05D004721 ORTHO05D005765 2.5e-29 132.9 125 56.8
unitig_37.g12822 Utricularia gibba HOM05D004721 ORTHO05D005765 1.2e-28 130.6 118 55.9
Actinidia33624 Actinidia chinensis HOM05D004721 ORTHO05D005765 3.3e-26 122.5 115 55.7
DCAR_023012 Daucus carota HOM05D004721 ORTHO05D005765 6.3e-25 118.2 120 54.2
Medtr3g117220 Medicago truncatula HOM05D004721 ORTHO05D005765 1.1e-24 117.5 101 59.4
SMO356G0699 Selaginella moellendorffii HOM05D004721 ORTHO05D005765 2.6e-23 112.8 118 47.5
AagrBONN_evm.TU.Sc2ySwM_117.356 Anthoceros agrestis HOM05D004721 ORTHO05D005765 7.7e-23 111.3 150 41.3
Mapoly0009s0236 Marchantia polymorpha HOM05D004721 ORTHO05D005765 1.0e-22 110.9 119 48.7
CBR_g50245 Chara braunii HOM05D004721 ORTHO05D005765 2.2e-22 109.8 150 38.7
SHI05562 Sapria himalayana HOM05D004721 ORTHO05D005765 2.2e-22 109.8 111 51.4
EL10Ac4g09012 Beta vulgaris HOM05D004721 ORTHO05D005765 8.5e-22 107.8 125 42.4
Nitab4.5_0003234g0080 Nicotiana tabacum HOM05D004721 ORTHO05D005765 4.2e-21 105.5 61 78.7
Pp3c14_5280 Physcomitrium patens HOM05D004721 ORTHO05D005765 7.2e-21 104.8 116 44.8
Cre17.g723550 Chlamydomonas reinhardtii HOM05D004721 ORTHO05D005765 1.6e-20 103.6 150 35.3
DCAR_030585 Daucus carota HOM05D004721 ORTHO05D005765 2.1e-20 103.2 116 44.0
Pp3c11_19670 Physcomitrium patens HOM05D004721 ORTHO05D005765 2.1e-20 103.2 143 40.6
Pp3c7_6620 Physcomitrium patens HOM05D004721 ORTHO05D005765 3.6e-20 102.4 116 44.8
MCO05G057 Micromonas commoda HOM05D004721 ORTHO05D005765 6.1e-20 101.7 113 44.2
AUR62040957 Chenopodium quinoa HOM05D004721 ORTHO05D005765 2.3e-19 99.8 115 44.3
PRCOL_00005559 Prasinoderma coloniale HOM05D004721 ORTHO05D005765 1.3e-17 94.0 118 39.8
AUR62024760 Chenopodium quinoa HOM05D004721 ORTHO05D005765 1.1e-16 90.9 106 41.5
TWI77G0152 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 1.8e-16 90.1 106 44.3
TWI77G0224 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 1.8e-16 90.1 106 44.3
TWI77G0506 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 1.8e-16 90.1 106 44.3
TWI77G0992 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 1.8e-16 90.1 106 44.3
TWI34G1838 Tripterygium wilfordii HOM05D004721 ORTHO05D005765 1.2e-15 87.4 106 41.5
AUR62016772 Chenopodium quinoa HOM05D004721 ORTHO05D005765 1.5e-15 87.0 120 40.8
AUR62038677 Chenopodium quinoa HOM05D004721 ORTHO05D005765 5.0e-14 82.0 95 43.2
Nitab4.5_0005441g0050 Nicotiana tabacum HOM05D004721 ORTHO05D005765 6.5e-14 81.6 118 34.7
Haze_27473 Corylus avellana HOM05D004721 ORTHO05D005765 5.5e-13 78.6 114 38.6
Nitab4.5_0002361g0020 Nicotiana tabacum HOM05D004721 ORTHO05D005765 5.5e-13 78.6 118 33.1
Peaxi162Scf01049g00011 Petunia axillaris HOM05D004721 ORTHO05D005765 7.2e-13 78.2 118 32.2
Nitab4.5_0015623g0010 Nicotiana tabacum HOM05D004721 ORTHO05D005765 3.6e-12 75.9 123 35.0
AUR62037690 Chenopodium quinoa HOM05D000031 ORTHO05D001033 1.4e-11 73.9 53 58.5
Peaxi162Scf01112g00011 Petunia axillaris HOM05D004721 ORTHO05D005765 1.8e-11 73.6 113 34.5
PGR042G3536 Punica granatum HOM05D004721 ORTHO05D005765 1.7e-09 67.0 31 96.8
Nitab4.5_0000632g0120 Nicotiana tabacum HOM05D004721 ORTHO05D005765 3.7e-09 65.9 101 36.6
PGSC0003DMG400022510 Solanum tuberosum HOM05D004721 ORTHO05D005765 3.7e-09 65.9 111 32.4
Nitab4.5_0003611g0070 Nicotiana tabacum HOM05D004721 ORTHO05D005765 1.1e-08 64.3 103 33.0
Sopen01g041380 Solanum pennellii HOM05D004721 ORTHO05D005765 2.6e-07 59.7 101 37.6


User provided reference genes

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