Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 0.0e+00 1109.7 573 100.0
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 0.0e+00 1104.0 573 99.7
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.0e-262 909.8 572 83.7
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 9.7e-261 903.3 575 82.8
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 3.7e-252 874.8 604 77.8
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 1.9e-248 862.4 573 78.2
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 1.6e-226 789.6 571 74.1
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 2.1e-223 779.2 507 80.3
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 4.7e-223 778.1 569 72.2
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 4.0e-222 775.0 564 70.7
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 4.4e-221 771.5 572 72.6
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 7.5e-221 770.8 566 72.1
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 5.4e-219 764.6 572 70.8
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.0e-218 762.7 569 69.4
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 1.7e-217 759.6 569 70.8
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.7e-217 759.6 569 69.2
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 2.9e-217 758.8 565 70.1
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 6.1e-215 751.1 574 69.0
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 2.3e-214 749.2 572 69.9
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 3.0e-214 748.8 565 70.1
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 3.0e-214 748.8 566 69.4
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 4.0e-214 748.4 567 70.7
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 3.4e-213 745.3 568 69.0
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 3.4e-213 745.3 567 69.5
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 2.2e-212 742.7 571 70.1
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 4.1e-211 738.4 577 68.5
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 5.4e-211 738.0 567 70.2
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 1.3e-209 733.4 570 69.3
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 3.0e-209 732.3 567 68.4
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.9e-209 731.9 574 67.8
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.0e-209 731.5 574 68.1
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.6e-209 731.1 574 67.6
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.1e-208 730.3 566 69.8
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 1.1e-208 730.3 571 68.7
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 4.3e-208 728.4 567 68.4
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 4.7e-207 724.9 567 70.2
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.1e-206 722.2 574 67.1
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 5.2e-206 721.5 567 68.1
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 8.9e-206 720.7 567 68.1
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 8.9e-206 720.7 569 68.0
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 7.5e-205 717.6 567 68.8
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 1.7e-204 716.5 563 67.9
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 1.4e-203 713.4 567 67.9
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 1.6e-202 709.9 499 71.3
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.6e-202 708.4 565 66.7
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 1.7e-201 706.4 578 67.0
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 8.6e-201 704.1 568 66.4
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 1.1e-200 703.7 565 67.3
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 1.1e-200 703.7 567 66.8
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.2e-199 700.3 569 66.3
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 2.1e-199 699.5 571 66.0
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 1.1e-198 697.2 527 71.2
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 1.4e-198 696.8 575 64.5
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 3.1e-198 695.7 570 63.9
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 3.4e-197 692.2 585 65.1
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 7.5e-197 691.0 573 65.3
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 1.3e-196 690.3 592 65.2
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 2.2e-196 689.5 573 63.7
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 2.9e-196 689.1 570 63.9
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 4.9e-196 688.3 578 65.7
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 6.4e-196 688.0 566 63.6
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 1.1e-195 687.2 568 64.4
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 1.9e-195 686.4 576 63.5
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 4.1e-195 685.3 561 64.3
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 9.2e-195 684.1 561 64.2
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 1.2e-194 683.7 570 64.6
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 2.1e-194 682.9 561 64.3
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 3.5e-194 682.2 564 65.2
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 6.0e-194 681.4 573 63.2
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 7.8e-194 681.0 570 63.2
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 1.3e-193 680.2 561 63.8
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 1.3e-193 680.2 561 63.8
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 2.3e-193 679.5 561 63.6
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 5.1e-193 678.3 572 63.1
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 2.5e-192 676.0 595 61.2
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 2.5e-192 676.0 566 62.2
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 4.3e-192 675.2 573 62.1
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 1.2e-191 673.7 569 65.2
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 2.0e-189 666.4 575 64.5
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 3.8e-188 662.1 475 73.5
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 1.4e-187 660.2 608 62.2
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 5.4e-187 658.3 561 62.2
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 2.1e-186 656.4 583 60.5
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 1.3e-185 653.7 562 62.1
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 2.3e-185 652.9 601 61.9
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 5.1e-185 651.7 575 64.9
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 9.0e-182 641.0 570 62.1
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 1.2e-181 640.6 483 70.2
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 6.4e-180 634.8 587 58.9
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 3.2e-179 632.5 570 61.4
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 1.6e-175 620.2 567 62.1
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 7.6e-173 611.3 583 58.5
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 2.9e-172 609.4 505 65.5
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 8.4e-172 607.8 650 55.7
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 2.7e-170 602.8 461 67.9
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 2.7e-170 602.8 513 62.6
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 7.9e-170 601.3 503 64.4
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 5.3e-166 588.6 486 65.4
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 6.9e-166 588.2 575 59.3
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 1.1e-155 554.3 570 57.4
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 4.6e-154 548.9 533 55.0
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.9e-152 543.5 590 56.3
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 4.3e-152 542.3 553 57.3
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 6.9e-150 535.0 571 53.2
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 2.2e-148 530.0 474 60.5
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.6e-146 522.3 349 75.1
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.8e-145 520.4 513 55.2
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 3.7e-143 512.7 349 75.6
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.4e-142 510.0 340 79.1
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 7.0e-134 481.9 339 74.0
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 7.0e-134 481.9 403 66.0
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 2.6e-133 479.9 524 53.4
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 2.6e-120 436.8 492 50.8
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 3.7e-119 433.0 372 62.1
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.9e-115 420.6 243 90.5
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 3.1e-110 403.3 242 83.5
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 3.1e-110 403.3 242 83.5
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 3.8e-108 396.4 419 55.6
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 1.8e-105 387.5 305 63.6
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 2.3e-105 387.1 395 55.2
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 6.3e-103 379.0 234 79.9
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 2.0e-101 374.0 425 52.7
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.7e-95 354.4 192 94.3
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.9e-95 353.6 283 65.4
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 4.9e-95 352.8 412 52.2
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 1.3e-87 328.2 401 50.4
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.2e-85 321.6 379 53.6
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 4.7e-82 309.7 573 36.3
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 3.0e-76 290.4 159 88.7
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 6.6e-76 289.3 580 34.5
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 2.9e-63 247.3 143 85.3
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.9e-62 244.6 143 88.8
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 1.9e-62 244.6 462 39.0
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.5e-61 240.4 143 86.7
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 5.6e-59 233.0 198 65.2
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 2.4e-57 227.6 134 86.6
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.4e-56 223.8 128 88.3
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 1.1e-51 208.8 236 54.7
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 6.2e-50 203.0 526 31.2
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 4.8e-42 176.8 497 31.0
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.5e-35 154.5 88 87.5
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.1e-33 149.1 162 53.1
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.0e-32 144.8 92 79.3
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.4e-30 138.7 174 45.4
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 2.7e-29 134.4 210 42.4
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-26 125.2 122 54.9
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 5.5e-22 110.2 132 49.2
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 4.4e-19 100.5 252 29.0
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 3.7e-18 97.4 257 30.0
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.1e-17 94.4 52 88.5
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 3.1e-17 94.4 590 25.8
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 2.2e-15 88.2 45 91.1
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 4.2e-14 84.0 91 56.0
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 5.7e-11 73.6 319 29.5
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 1.9e-06 58.5 199 27.6
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 5.5e-06 57.0 32 87.5


User provided reference genes

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