Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 7.0e-156 553.9 280 100.0
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.6e-154 547.0 280 98.9
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.4e-151 539.7 289 95.5
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.7e-149 532.7 269 99.6
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 2.2e-117 426.0 279 78.1
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 2.5e-108 396.0 280 76.4
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.4e-103 380.2 280 71.1
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 3.8e-101 372.1 283 71.4
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 4.9e-101 371.7 281 69.8
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.5e-100 369.4 281 70.8
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 2.7e-99 365.9 280 69.6
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 6.1e-99 364.8 259 72.2
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 2.3e-98 362.8 274 70.4
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 5.1e-98 361.7 277 67.1
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 8.7e-98 360.9 278 70.5
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 9.7e-97 357.5 271 70.1
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.3e-96 357.1 280 70.7
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 1.6e-96 356.7 282 67.7
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.6e-96 356.7 268 68.3
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 2.8e-96 355.9 270 68.5
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 4.8e-96 355.1 255 71.4
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 8.2e-96 354.4 288 65.6
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.8e-95 353.2 279 67.7
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 3.1e-95 352.4 226 78.3
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 3.1e-95 352.4 279 67.0
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 9.0e-95 350.9 278 68.0
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 9.0e-95 350.9 213 82.2
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 9.0e-95 350.9 245 72.7
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.5e-94 350.1 277 66.1
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.6e-94 349.4 275 65.1
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 2.6e-94 349.4 280 66.1
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 4.5e-94 348.6 280 65.7
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 5.9e-94 348.2 279 67.0
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 5.9e-94 348.2 223 77.6
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 7.7e-94 347.8 257 69.6
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 7.7e-94 347.8 280 66.4
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 2.2e-93 346.3 275 67.6
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.9e-93 345.9 275 66.9
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 3.8e-93 345.5 252 73.4
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 6.5e-93 344.7 280 66.1
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.9e-92 343.2 265 65.3
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.9e-92 343.2 257 69.3
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 7.2e-92 341.3 247 68.8
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 7.2e-92 341.3 230 74.8
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 9.4e-92 340.9 258 70.5
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.2e-91 340.5 257 68.9
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 6.1e-91 338.2 207 79.2
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 7.9e-91 337.8 267 66.3
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 7.9e-91 337.8 281 66.2
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.4e-90 337.0 262 67.9
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.8e-90 336.7 276 66.3
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 6.7e-90 334.7 282 63.8
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 8.8e-90 334.3 282 64.5
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.1e-89 334.0 270 66.7
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.7e-88 330.1 284 64.1
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.7e-88 330.1 284 64.1
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.7e-88 328.9 228 73.7
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 4.8e-88 328.6 269 66.9
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 4.8e-88 328.6 280 64.3
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 8.2e-88 327.8 200 81.5
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.1e-87 327.4 271 62.4
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.4e-87 326.2 246 69.5
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 4.1e-87 325.5 199 81.4
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 4.1e-87 325.5 282 64.2
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 5.3e-87 325.1 244 68.4
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 9.1e-87 324.3 274 63.9
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 2.6e-86 322.8 240 69.2
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 4.5e-86 322.0 199 80.4
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 7.7e-86 321.2 199 80.9
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.7e-85 320.1 235 71.1
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 2.2e-85 319.7 199 80.9
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 2.2e-85 319.7 263 65.8
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 2.2e-85 319.7 272 64.0
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.9e-85 319.3 274 62.8
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.9e-85 319.3 263 65.8
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 3.8e-85 318.9 276 64.1
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 5.0e-85 318.5 248 69.4
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.0e-85 318.5 272 65.1
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 5.0e-85 318.5 267 65.9
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.4e-84 317.0 274 62.4
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.4e-84 317.0 270 63.7
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 1.4e-84 317.0 233 68.7
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 3.2e-84 315.8 272 62.1
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 3.2e-84 315.8 205 78.0
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 4.2e-84 315.5 210 77.6
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 7.2e-84 314.7 200 77.5
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 2.1e-83 313.2 274 64.2
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.1e-83 313.2 255 64.7
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 2.1e-83 313.2 249 65.5
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 6.1e-83 311.6 216 72.7
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 6.1e-83 311.6 246 68.3
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.4e-82 310.5 214 75.2
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 1.8e-82 310.1 216 73.6
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 3.0e-82 309.3 288 60.4
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 5.1e-82 308.5 279 64.2
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 6.7e-82 308.1 182 85.7
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.7e-82 308.1 277 63.5
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 6.7e-82 308.1 201 78.6
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.1e-81 307.4 245 69.0
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.5e-81 307.0 227 70.5
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.5e-81 307.0 196 79.1
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.6e-81 306.2 202 77.2
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 3.3e-81 305.8 274 63.9
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 3.3e-81 305.8 201 78.1
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 3.3e-81 305.8 201 78.1
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 7.4e-81 304.7 245 68.6
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 9.7e-81 304.3 204 76.0
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 9.7e-81 304.3 177 85.9
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 4.8e-80 302.0 183 85.2
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 2.6e-78 296.2 193 78.2
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.9e-78 295.0 193 75.1
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 5.0e-77 292.0 221 68.3
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.1e-76 290.8 220 68.2
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 7.2e-76 288.1 202 71.8
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.6e-75 287.0 202 69.8
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 2.1e-75 286.6 242 64.5
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 3.6e-75 285.8 207 69.6
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 2.3e-74 283.1 200 71.0
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 6.3e-72 275.0 193 75.6
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 8.2e-72 274.6 238 60.9
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 2.4e-71 273.1 205 67.3
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.0e-69 267.7 179 73.2
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 4.7e-67 258.8 246 56.1
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 8.0e-67 258.1 279 55.6
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 1.4e-66 257.3 245 57.1
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 3.4e-65 252.7 165 73.9
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 3.4e-65 252.7 165 73.9
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.2e-62 244.2 259 56.4
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 5.9e-62 241.9 234 53.4
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 3.2e-60 236.1 221 60.6
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.4e-58 230.7 183 65.6
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 4.1e-55 219.2 269 49.8
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.0e-50 204.5 131 74.8
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 3.0e-50 203.0 192 59.9
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 2.3e-45 186.8 111 82.0
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.2e-43 181.0 112 80.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.6e-43 180.6 202 46.5
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.0e-41 173.7 178 51.1
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 3.2e-39 166.4 93 86.0
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 8.6e-37 158.3 217 47.0
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.0e-33 147.1 211 46.0
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.0e-33 147.1 88 79.5
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 8.9e-26 121.7 151 51.0
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.5e-25 120.9 210 35.2
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.5e-25 120.9 156 42.9
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 1.3e-24 117.9 137 48.2
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.2e-24 117.1 214 37.9
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 2.4e-23 113.6 70 77.1
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.0e-21 106.7 205 35.1
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 4.3e-20 102.8 202 34.7
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 3.6e-19 99.8 149 39.6
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 2.1e-14 84.0 65 61.5
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 3.5e-14 83.2 66 60.6
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 7.3e-12 75.5 113 45.1
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 9.9e-09 65.1 38 81.6
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 2.9e-08 63.5 67 58.2
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 2.1e-06 57.4 152 31.6


User provided reference genes

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