Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 3.3e-127 458.4 228 100.0
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 3.2e-106 388.7 229 85.2
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 3.0e-104 382.1 228 80.7
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.6e-102 376.3 228 83.3
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 5.8e-100 367.9 224 78.6
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 2.2e-99 365.9 227 78.0
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 6.4e-99 364.4 228 75.0
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.1e-98 363.6 224 78.6
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 7.1e-98 360.9 228 76.3
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 7.1e-98 360.9 227 76.7
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 7.1e-98 360.9 228 76.8
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 9.3e-98 360.5 224 77.7
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 1.6e-97 359.8 223 76.7
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 2.7e-97 359.0 223 74.9
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 2.7e-97 359.0 224 75.0
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 6.0e-97 357.8 224 75.9
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 1.0e-96 357.1 226 77.4
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 6.7e-96 354.4 243 72.4
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 8.7e-96 354.0 224 76.3
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 8.7e-96 354.0 224 77.2
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 1.1e-95 353.6 224 75.4
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 1.5e-95 353.2 222 76.6
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 2.5e-95 352.4 223 76.2
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.5e-95 352.4 222 75.7
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 2.5e-95 352.4 224 76.8
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 4.3e-95 351.7 228 73.2
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 5.6e-95 351.3 228 73.7
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 1.3e-94 350.1 224 75.0
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 1.6e-94 349.7 228 76.8
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.8e-94 349.0 224 75.0
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 3.7e-94 348.6 224 76.3
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 6.2e-94 347.8 228 72.4
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.4e-93 346.7 224 75.0
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 2.6e-92 342.4 226 73.9
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 2.6e-92 342.4 225 75.1
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 1.0e-91 340.5 249 66.7
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 1.3e-91 340.1 227 71.4
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 1.7e-91 339.7 222 75.2
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 2.2e-91 339.3 226 72.6
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 6.4e-91 337.8 224 72.8
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.1e-90 337.0 228 70.6
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 1.1e-90 337.0 215 75.8
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 4.2e-90 335.1 225 75.1
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 5.5e-90 334.7 229 71.6
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 9.3e-90 334.0 232 71.1
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 1.2e-89 333.6 229 71.6
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 1.6e-89 333.2 220 72.7
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 2.1e-89 332.8 224 71.4
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 2.7e-89 332.4 225 72.0
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 3.5e-89 332.0 224 70.5
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 6.0e-89 331.3 228 70.6
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 1.0e-88 330.5 224 71.4
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 1.0e-88 330.5 224 71.4
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 1.0e-88 330.5 220 71.8
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 1.3e-88 330.1 224 70.5
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 2.3e-88 329.3 225 70.7
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 3.0e-88 328.9 228 69.3
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 3.9e-88 328.6 227 69.6
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 5.1e-88 328.2 224 68.8
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 1.1e-87 327.0 220 70.9
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 2.5e-87 325.9 222 70.7
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 4.3e-87 325.1 224 69.6
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 5.7e-87 324.7 222 70.3
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 7.4e-87 324.3 220 70.9
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 7.4e-87 324.3 224 68.8
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 1.3e-86 323.6 229 69.4
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 6.2e-86 321.2 220 70.5
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 6.2e-86 321.2 220 69.5
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 1.4e-85 320.1 225 70.7
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.4e-85 319.3 221 69.7
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.4e-85 319.3 226 69.0
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 9.0e-85 317.4 220 69.1
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.2e-84 317.0 221 69.7
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 1.2e-84 317.0 224 68.3
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 1.7e-83 313.2 220 68.2
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.4e-83 310.8 243 65.8
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 1.4e-82 310.1 229 66.8
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 9.3e-82 307.4 243 65.0
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.2e-81 307.0 246 64.6
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 2.1e-81 306.2 221 65.2
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 2.8e-78 295.8 222 64.9
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 6.3e-78 294.7 231 63.2
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 5.3e-77 291.6 237 68.8
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 1.2e-76 290.4 227 63.0
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 4.5e-76 288.5 237 68.4
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 5.5e-74 281.6 221 66.5
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 1.2e-73 280.4 223 62.3
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 3.3e-71 272.3 237 56.5
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 9.7e-71 270.8 164 76.8
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 2.4e-69 266.2 179 72.6
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 2.4e-69 266.2 170 74.7
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 9.1e-69 264.2 146 84.2
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 2.2e-67 259.6 164 75.6
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 5.0e-67 258.5 164 76.2
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 8.5e-67 257.7 227 56.8
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 6.7e-64 248.1 172 69.8
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 3.3e-63 245.7 158 70.9
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 7.7e-60 234.6 220 56.8
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 4.2e-58 228.8 174 64.4
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 2.1e-57 226.5 226 50.0
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 2.7e-57 226.1 221 52.0
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 6.1e-57 224.9 222 50.5
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 2.6e-55 219.5 169 64.5
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 1.3e-54 217.2 223 52.0
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 2.2e-54 216.5 169 63.9
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 4.1e-53 212.2 134 82.8
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 6.1e-49 198.4 118 78.0
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 6.8e-48 194.9 118 75.4
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 2.0e-47 193.4 143 63.6
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 1.9e-42 176.8 105 76.2
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 1.0e-40 171.0 191 47.6
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 1.3e-38 164.1 151 60.3
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 3.1e-37 159.5 126 61.9
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 1.9e-34 150.2 144 57.6
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 1.0e-27 127.9 223 37.7
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.3e-27 126.7 107 59.8
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 2.3e-19 100.1 113 46.9
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 2.3e-19 100.1 113 46.9
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 8.9e-16 88.2 52 80.8
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 8.9e-16 88.2 52 80.8
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 5.8e-15 85.5 63 60.3
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 2.1e-12 77.0 47 72.3
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 6.2e-09 65.5 187 29.4
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 4.0e-08 62.8 184 29.3
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 6.8e-08 62.0 185 25.9
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 8.9e-08 61.6 186 28.0
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 2.6e-07 60.1 189 28.6
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 2.6e-07 60.1 232 28.0
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 4.4e-07 59.3 233 27.5
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 5.8e-07 58.9 187 27.8
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 5.8e-07 58.9 231 27.3
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 5.8e-07 58.9 186 28.0
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 5.8e-07 58.9 186 28.5
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 7.6e-07 58.5 187 27.8
CSS0001175 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D109626 9.9e-07 58.2 36 72.2
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 9.9e-07 58.2 227 26.9
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 9.9e-07 58.2 186 28.0
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 9.9e-07 58.2 186 28.5
ClCG02G010000 Citrullus lanatus HOM05D006820 ORTHO05D008526 1.3e-06 57.8 31 80.6
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 1.3e-06 57.8 186 28.0
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 2.2e-06 57.0 197 27.9
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 2.9e-06 56.6 231 26.0
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 3.7e-06 56.2 231 25.5
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 3.7e-06 56.2 231 26.0
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 3.7e-06 56.2 185 28.6
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 3.7e-06 56.2 186 28.5
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 4.9e-06 55.8 232 28.0
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 4.9e-06 55.8 186 29.0
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 4.9e-06 55.8 231 26.4
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 4.9e-06 55.8 186 28.0
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 6.4e-06 55.5 186 29.0
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 6.4e-06 55.5 186 28.0
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 6.4e-06 55.5 186 27.4


User provided reference genes

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