Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 2.1e-144 516.2 368 100.0
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 3.1e-119 432.6 341 86.5
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 9.4e-92 341.3 341 78.0
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 6.3e-88 328.6 347 70.0
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 3.8e-85 319.3 339 58.1
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 1.8e-79 300.4 341 67.2
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 4.1e-79 299.3 342 66.4
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 5.4e-79 298.9 342 65.2
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 1.2e-78 297.7 341 53.7
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 7.7e-78 295.0 344 68.9
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 5.0e-77 292.4 357 66.7
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 1.9e-76 290.4 383 65.8
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 2.5e-76 290.0 339 68.4
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 4.2e-76 289.3 364 65.1
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 1.2e-75 287.7 352 66.2
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 2.8e-75 286.6 369 65.9
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 4.7e-75 285.8 359 67.1
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 1.4e-74 284.3 339 60.8
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 1.2e-73 281.2 346 63.6
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 1.2e-73 281.2 350 65.4
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 2.0e-73 280.4 342 57.3
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 2.6e-73 280.0 347 58.8
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 7.5e-73 278.5 347 56.8
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 9.8e-73 278.1 347 68.9
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 9.8e-73 278.1 370 64.3
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 9.8e-73 278.1 361 66.2
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 2.2e-72 276.9 354 68.6
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 3.7e-72 276.2 369 66.1
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 8.3e-72 275.0 352 68.2
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 1.8e-71 273.9 341 61.0
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 1.2e-70 271.2 351 64.4
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 6.6e-69 265.4 342 64.6
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 5.6e-68 262.3 349 61.3
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 9.5e-68 261.5 344 61.0
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 9.5e-68 261.5 351 65.0
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 1.2e-67 261.2 353 65.7
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 1.2e-67 261.2 352 64.8
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 2.8e-67 260.0 346 65.9
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 2.8e-67 260.0 347 64.3
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 3.6e-67 259.6 352 64.8
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 6.1e-67 258.8 354 65.8
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 1.0e-66 258.1 340 65.0
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 1.4e-66 257.7 364 61.0
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 1.8e-66 257.3 353 61.5
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 1.8e-66 257.3 360 64.2
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 2.3e-66 256.9 345 63.8
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 3.1e-66 256.5 355 65.1
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 4.0e-66 256.1 340 64.1
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 1.2e-65 254.6 345 64.9
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 1.2e-65 254.6 345 64.9
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 2.6e-65 253.4 342 61.4
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 2.2e-64 250.4 366 62.0
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 2.2e-64 250.4 342 62.6
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 1.1e-63 248.1 366 63.1
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 4.1e-63 246.1 360 65.3
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 9.2e-63 245.0 355 63.7
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 2.7e-62 243.4 375 61.6
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 4.6e-62 242.7 372 62.1
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 4.6e-62 242.7 342 46.8
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 6.0e-62 242.3 344 58.4
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 3.9e-61 239.6 343 47.2
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 8.6e-61 238.4 378 59.8
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 1.2e-59 234.6 343 54.2
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 1.2e-59 234.6 376 58.0
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 8.0e-59 231.9 369 60.4
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 2.3e-58 230.3 346 61.3
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 5.2e-58 229.2 175 68.0
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 6.8e-58 228.8 342 54.1
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 6.8e-58 228.8 342 54.1
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 1.5e-57 227.6 345 56.2
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 2.0e-57 227.3 378 59.3
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 4.4e-57 226.1 343 56.3
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 5.8e-57 225.7 343 54.2
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 9.8e-57 224.9 392 54.1
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 1.3e-56 224.6 344 60.2
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 6.4e-56 222.2 377 56.8
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 1.4e-55 221.1 353 55.8
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 5.4e-55 219.2 367 46.9
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 1.2e-54 218.0 345 58.6
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 1.6e-54 217.6 390 51.5
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 4.6e-54 216.1 343 58.3
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 6.0e-54 215.7 344 47.4
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 1.3e-53 214.5 339 47.5
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 5.6e-52 209.1 272 73.2
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 6.2e-51 205.7 343 57.7
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 1.1e-50 204.9 342 51.8
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 1.3e-48 198.0 290 61.7
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 4.9e-48 196.1 348 51.1
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 9.2e-47 191.8 208 53.4
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 7.8e-46 188.7 394 52.3
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 3.9e-45 186.4 146 67.1
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 1.5e-44 184.5 153 64.1
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 4.7e-43 179.5 331 56.5
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 4.7e-43 179.5 349 53.9
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 1.4e-39 167.9 285 61.8
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 4.6e-38 162.9 254 59.1
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 8.7e-37 158.7 380 48.4
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 1.9e-36 157.5 122 66.4
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 3.8e-32 143.3 111 63.1
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 4.9e-32 142.9 120 61.7
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 2.4e-31 140.6 144 54.9
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 1.8e-26 124.4 274 46.7
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 4.0e-26 123.2 151 48.3
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 2.0e-25 120.9 499 34.7
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 3.8e-24 116.7 88 61.4
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 4.9e-24 116.3 193 38.9
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 1.1e-23 115.2 101 56.4
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 2.4e-23 114.0 215 61.4
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 2.7e-22 110.5 409 33.3
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 1.1e-20 105.1 91 60.4
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 2.5e-20 104.0 97 55.7
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 4.3e-20 103.2 165 39.4
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 3.4e-17 93.6 197 34.0
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 2.2e-16 90.9 102 56.9
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.4e-15 88.2 119 43.7
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 2.5e-15 87.4 79 64.6
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 3.5e-14 83.6 77 63.6
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 3.9e-13 80.1 102 44.1
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 3.9e-13 80.1 102 44.1
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 5.1e-13 79.7 105 42.9
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 6.7e-13 79.3 78 53.8
arahy.Tifrunner.gnm1.ann1.N3K4CS Arachis hypogaea HOM05D008215 ORTHO05D004366 1.9e-12 77.8 104 44.2
arahy.Tifrunner.gnm1.ann1.696ALD Arachis hypogaea HOM05D008215 ORTHO05D004366 1.3e-11 75.1 74 54.1
arahy.Tifrunner.gnm1.ann1.YEU6LJ Arachis hypogaea HOM05D006566 ORTHO05D004366 1.6e-11 74.7 70 55.7
Oeu042970.1 Olea europaea HOM05D006566 ORTHO05D004366 3.7e-11 73.6 85 48.2
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 6.2e-11 72.8 102 41.2
arahy.Tifrunner.gnm1.ann1.1NHG9F Arachis hypogaea HOM05D008215 ORTHO05D004366 6.9e-10 69.3 113 38.1
arahy.Tifrunner.gnm1.ann1.1P551D Arachis hypogaea HOM05D008215 ORTHO05D004366 6.9e-10 69.3 102 43.1
arahy.Tifrunner.gnm1.ann1.0AYN0M Arachis hypogaea HOM05D008215 ORTHO05D004366 2.0e-09 67.8 100 44.0
arahy.Tifrunner.gnm1.ann1.01UHHT Arachis hypogaea HOM05D008215 ORTHO05D004366 3.4e-09 67.0 105 41.0
arahy.Tifrunner.gnm1.ann1.3DHQ20 Arachis hypogaea HOM05D008215 ORTHO05D004366 3.4e-09 67.0 105 41.0
arahy.Tifrunner.gnm1.ann1.U9CRBQ Arachis hypogaea HOM05D008215 ORTHO05D004366 5.8e-09 66.2 99 43.4
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 7.6e-09 65.9 40 75.0
arahy.Tifrunner.gnm1.ann1.TAU4F3 Arachis hypogaea HOM05D008215 ORTHO05D004366 7.6e-09 65.9 91 44.0
arahy.Tifrunner.gnm1.ann1.U6CLNF Arachis hypogaea HOM05D008215 ORTHO05D004366 7.6e-09 65.9 102 42.2
arahy.Tifrunner.gnm1.ann1.PJX35B Arachis hypogaea HOM05D008215 ORTHO05D004366 1.0e-08 65.5 105 39.0
arahy.Tifrunner.gnm1.ann1.KE1U92 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.3e-08 65.1 99 42.4
arahy.Tifrunner.gnm1.ann1.P1RV09 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.7e-08 64.7 99 42.4
arahy.Tifrunner.gnm1.ann1.N5TKCQ Arachis hypogaea HOM05D008215 ORTHO05D004366 2.9e-08 63.9 115 37.4
arahy.Tifrunner.gnm1.ann1.8K6P1P Arachis hypogaea HOM05D008215 ORTHO05D004366 6.5e-08 62.8 95 40.0
arahy.Tifrunner.gnm1.ann1.15M8G9 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.5e-07 60.8 99 40.4
arahy.Tifrunner.gnm1.ann1.J3W7RL Arachis hypogaea HOM05D008215 ORTHO05D004366 2.5e-07 60.8 99 41.4
arahy.Tifrunner.gnm1.ann1.8PL5QC Arachis hypogaea HOM05D008215 ORTHO05D004366 4.2e-07 60.1 100 39.0
arahy.Tifrunner.gnm1.ann1.BH3K81 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.1e-06 57.8 56 53.6
arahy.Tifrunner.gnm1.ann1.IYQ4QW Arachis hypogaea HOM05D008215 ORTHO05D004366 2.1e-06 57.8 56 53.6
arahy.Tifrunner.gnm1.ann1.TNWQ22 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.1e-06 57.8 56 53.6
arahy.Tifrunner.gnm1.ann1.53FFQK Arachis hypogaea HOM05D008215 ORTHO05D004366 2.7e-06 57.4 60 48.3
arahy.Tifrunner.gnm1.ann1.65QQ6U Arachis hypogaea HOM05D008215 ORTHO05D004366 2.7e-06 57.4 56 51.8
arahy.Tifrunner.gnm1.ann1.J7IPJF Arachis hypogaea HOM05D008215 ORTHO05D004366 2.7e-06 57.4 60 48.3
arahy.Tifrunner.gnm1.ann1.N8KI2G Arachis hypogaea HOM05D008215 ORTHO05D004366 2.7e-06 57.4 60 48.3
arahy.Tifrunner.gnm1.ann1.XH4RCS Arachis hypogaea HOM05D008215 ORTHO05D004366 2.7e-06 57.4 60 48.3
arahy.Tifrunner.gnm1.ann1.KS76FR Arachis hypogaea HOM05D008215 ORTHO05D004366 3.5e-06 57.0 56 53.6
arahy.Tifrunner.gnm1.ann1.PGWD8S Arachis hypogaea HOM05D008215 ORTHO05D004366 4.6e-06 56.6 60 48.3
arahy.Tifrunner.gnm1.ann1.0B2DCJ Arachis hypogaea HOM05D008215 ORTHO05D004366 7.9e-06 55.8 56 51.8
arahy.Tifrunner.gnm1.ann1.0NID34 Arachis hypogaea HOM05D008215 ORTHO05D004366 7.9e-06 55.8 56 51.8
arahy.Tifrunner.gnm1.ann1.AZ2039 Arachis hypogaea HOM05D008215 ORTHO05D004366 7.9e-06 55.8 60 46.7
arahy.Tifrunner.gnm1.ann1.X4FCWR Arachis hypogaea HOM05D008215 ORTHO05D004366 7.9e-06 55.8 60 46.7


User provided reference genes

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