Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 9.9e-247 856.3 418 100.0
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 3.1e-200 701.8 430 80.2
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 1.3e-198 696.4 426 79.8
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 1.7e-193 679.5 424 76.9
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 4.8e-193 677.9 431 74.7
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 7.0e-192 674.1 428 75.0
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 1.6e-191 672.9 438 75.3
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 2.0e-191 672.5 428 75.5
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 3.5e-191 671.8 432 76.2
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 4.5e-191 671.4 430 74.9
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 5.9e-191 671.0 433 76.2
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 1.0e-190 670.2 433 75.8
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 1.3e-190 669.8 419 76.6
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 2.5e-189 665.6 423 75.9
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 2.5e-189 665.6 434 77.0
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 2.1e-188 662.5 428 73.8
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 8.0e-188 660.6 435 74.0
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.3e-187 659.1 435 73.8
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 5.2e-187 657.9 434 75.1
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 5.2e-187 657.9 438 74.7
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 5.2e-187 657.9 435 73.6
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 5.2e-187 657.9 430 75.1
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 4.4e-186 654.8 433 74.6
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 1.3e-185 653.3 432 75.2
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 1.7e-185 652.9 421 73.9
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 1.4e-184 649.8 421 73.4
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 1.8e-184 649.4 433 73.4
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 2.4e-184 649.0 411 75.4
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 5.3e-184 647.9 431 73.3
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 7.0e-184 647.5 432 72.9
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.2e-183 646.7 422 76.3
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.7e-182 642.9 422 75.8
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 2.9e-182 642.1 432 72.9
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 6.5e-182 641.0 433 72.1
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 8.5e-182 640.6 430 72.3
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 8.5e-182 640.6 424 72.2
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 2.5e-181 639.0 424 71.9
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 4.2e-181 638.3 424 71.9
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 4.2e-181 638.3 420 76.7
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 9.4e-181 637.1 424 72.2
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 1.2e-180 636.7 424 71.7
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 2.7e-180 635.6 428 71.0
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 4.7e-180 634.8 431 71.5
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 6.1e-180 634.4 424 71.9
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 1.8e-179 632.9 430 70.5
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 2.3e-179 632.5 430 70.9
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 4.0e-179 631.7 423 73.0
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.2e-178 630.2 437 70.0
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 3.4e-178 628.6 430 72.6
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 5.7e-178 627.9 450 68.9
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 9.8e-178 627.1 418 71.8
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 1.7e-177 626.3 429 71.3
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 2.8e-177 625.5 414 71.5
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 3.7e-177 625.2 418 71.5
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 6.3e-177 624.4 414 71.5
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 8.3e-177 624.0 414 71.3
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.4e-176 623.2 427 70.5
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 1.8e-176 622.9 431 70.3
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 2.4e-176 622.5 421 70.3
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 4.1e-176 621.7 431 70.1
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 4.1e-176 621.7 431 70.3
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 1.2e-175 620.2 443 70.9
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 1.6e-175 619.8 428 68.5
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 2.0e-175 619.4 425 70.4
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.5e-175 618.2 436 69.3
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 1.3e-174 616.7 418 70.3
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 1.5e-173 613.2 432 68.1
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 1.9e-173 612.8 431 69.4
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 2.5e-173 612.5 414 70.8
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 2.5e-173 612.5 414 70.8
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 3.2e-173 612.1 461 67.7
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 4.2e-173 611.7 415 70.4
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 5.5e-173 611.3 431 69.6
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.0e-171 607.1 419 69.9
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 1.4e-171 606.7 432 69.4
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 1.4e-171 606.7 424 71.0
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.0e-171 605.5 419 69.7
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.2e-170 603.6 410 69.8
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.5e-170 603.2 432 68.1
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.5e-170 603.2 432 68.1
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 2.2e-169 599.4 437 66.8
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 4.9e-169 598.2 437 67.5
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 1.1e-168 597.0 412 69.9
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 3.1e-168 595.5 437 66.8
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 1.2e-167 593.6 427 66.7
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 2.0e-167 592.8 423 68.1
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 2.7e-167 592.4 412 69.9
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 1.0e-166 590.5 414 68.4
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 5.0e-166 588.2 435 65.5
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.1e-165 587.0 419 70.2
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 9.5e-165 583.9 434 66.4
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.6e-164 583.2 429 68.8
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 3.6e-164 582.0 412 68.7
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 6.1e-164 581.3 427 66.3
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.4e-163 580.1 423 64.3
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 3.0e-163 578.9 423 64.3
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 2.2e-161 572.8 431 66.6
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.8e-160 569.7 439 65.4
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.4e-160 569.3 433 63.3
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 4.6e-159 565.1 435 65.1
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.0e-158 563.9 431 66.4
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 1.5e-157 560.1 413 65.6
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 3.6e-156 555.4 414 65.5
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.0e-155 553.9 437 63.4
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 1.7e-153 546.6 430 64.0
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 3.2e-152 542.3 430 59.3
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 2.3e-150 536.2 430 59.8
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 3.9e-150 535.4 430 57.7
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.9e-149 533.1 438 60.7
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 4.7e-148 528.5 356 71.9
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.7e-145 518.8 419 58.7
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 9.2e-144 514.2 416 60.6
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.5e-141 506.1 449 55.7
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.5e-141 506.1 436 59.9
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 5.6e-141 505.0 420 57.6
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 2.0e-138 496.5 410 56.8
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 7.8e-135 484.6 392 58.2
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.2e-130 470.7 414 56.0
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 4.0e-123 445.7 406 56.7
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 8.4e-121 438.0 309 67.6
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 1.5e-117 427.2 432 50.2
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 2.4e-112 409.8 296 65.2
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 6.0e-111 405.2 398 50.5
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 3.3e-109 399.4 407 47.2
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.4e-107 394.0 431 52.4
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.4e-106 389.4 431 52.0
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 4.2e-104 382.5 408 45.6
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.9e-102 375.9 267 67.8
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.2e-97 360.1 348 49.4
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 1.2e-90 337.8 251 69.3
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 1.0e-89 334.7 227 67.8
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 7.2e-88 328.6 239 66.5
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 2.0e-85 320.5 409 40.6
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.1e-75 288.1 295 49.2
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 1.0e-62 245.0 156 75.6
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.3e-52 211.5 141 67.4
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 1.9e-48 197.6 161 59.6
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.5e-48 197.2 132 65.9
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.3e-48 196.8 307 38.1
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 4.7e-47 193.0 115 76.5
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 5.0e-41 172.9 127 66.1
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 9.5e-40 168.7 128 69.5
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-38 164.9 158 53.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 5.4e-35 152.9 393 27.5
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 6.6e-33 146.0 159 54.7
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 9.5e-32 142.1 211 43.1
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 4.3e-24 116.7 92 60.9
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 7.3e-24 115.9 78 67.9
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 2.8e-23 114.0 100 54.0
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.4e-21 107.1 68 70.6
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.5e-18 97.1 90 51.1
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 1.7e-17 94.7 61 72.1
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.0e-17 94.0 86 51.2
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.5e-16 90.9 146 34.2
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 7.3e-16 89.4 105 46.7
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 2.1e-15 87.8 57 73.7
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 1.8e-14 84.7 60 66.7
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 4.0e-14 83.6 58 70.7
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.3e-12 78.6 61 67.2
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 5.4e-11 73.2 58 62.1
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-10 72.0 55 63.6
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 1.0e-09 68.9 106 37.7
A05p19690 Brassica napus HOM05D004203 ORTHO05D004830 9.6e-08 62.4 51 58.8
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 4.8e-07 60.1 72 37.5
SEGI_22616 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 5.3e-06 56.6 61 41.0


User provided reference genes

Program Settings