Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 4.8e-307 1057.0 528 100.0
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.7e-225 785.4 549 75.8
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 5.6e-223 777.7 558 75.1
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 9.6e-223 776.9 549 75.0
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.8e-222 775.4 559 71.2
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.4e-221 773.1 553 74.0
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.0e-219 766.9 550 72.2
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 4.9e-219 764.6 555 71.4
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 3.2e-218 761.9 553 72.9
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 5.5e-218 761.1 553 72.7
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 5.5e-218 761.1 553 73.4
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 9.3e-218 760.4 548 73.5
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 3.5e-217 758.4 548 72.6
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 7.9e-217 757.3 551 74.0
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 8.7e-216 753.8 553 72.3
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.1e-215 753.4 554 72.2
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.3e-214 750.0 553 71.6
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 9.0e-213 743.8 553 69.8
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 4.5e-212 741.5 547 73.3
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 8.5e-211 737.3 557 70.7
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 9.4e-210 733.8 557 70.2
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 8.8e-208 727.2 560 70.7
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.1e-207 726.9 563 69.1
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 3.3e-207 725.3 557 68.4
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 7.4e-207 724.2 552 71.7
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.8e-205 719.5 562 68.1
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 3.4e-204 715.3 568 66.9
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 4.5e-204 714.9 562 67.8
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.3e-203 713.4 569 67.0
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.2e-203 712.6 563 67.9
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.1e-202 710.3 554 67.9
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 3.2e-202 708.8 569 67.1
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 4.2e-202 708.4 548 70.4
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 5.5e-202 708.0 547 68.4
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.4e-202 707.2 552 68.1
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.1e-201 706.1 552 67.9
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 7.9e-201 704.1 562 67.6
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.4e-199 698.4 553 67.6
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.4e-199 698.4 561 65.8
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.4e-199 698.4 558 67.9
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.4e-199 698.4 558 67.9
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.4e-199 697.6 582 63.9
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 4.8e-198 694.9 531 69.1
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.1e-197 693.7 565 65.8
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.1e-197 692.2 565 67.3
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 4.1e-197 691.8 569 65.2
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.2e-196 690.3 548 68.1
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.2e-196 690.3 533 69.0
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 4.5e-196 688.3 533 69.0
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 4.5e-196 688.3 567 64.7
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 5.9e-196 688.0 564 66.8
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 7.7e-196 687.6 533 69.0
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 2.2e-195 686.0 565 65.8
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 3.8e-195 685.3 548 67.9
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 6.5e-195 684.5 567 65.4
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 6.5e-195 684.5 567 65.4
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 6.5e-195 684.5 567 65.4
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 6.5e-195 684.5 554 67.3
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 3.2e-194 682.2 565 66.0
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 7.2e-194 681.0 562 64.9
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.1e-193 677.9 564 64.9
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-192 677.2 567 65.3
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 1.0e-192 677.2 556 65.6
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 3.0e-192 675.6 547 66.7
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 5.2e-192 674.9 559 65.1
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 6.7e-192 674.5 565 64.6
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.5e-191 673.3 547 65.6
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 2.2e-190 669.5 547 66.4
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 2.2e-190 669.5 553 65.5
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.8e-190 668.3 492 71.7
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.8e-189 666.4 577 62.7
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.6e-188 663.3 571 62.9
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 2.6e-188 662.5 544 65.8
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 7.7e-188 661.0 563 64.8
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.7e-187 659.8 507 69.8
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 6.5e-187 657.9 555 64.3
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 6.5e-187 657.9 564 63.8
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 8.5e-187 657.5 562 62.6
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 4.2e-186 655.2 554 63.5
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.6e-185 653.3 560 62.7
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.7e-185 651.7 556 64.6
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.0e-184 650.6 556 62.6
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 2.3e-184 649.4 554 63.2
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.2e-183 647.1 554 62.6
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.2e-183 647.1 554 63.2
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 3.3e-183 645.6 561 63.6
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 5.3e-181 638.3 549 62.7
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.6e-180 636.7 558 61.6
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 4.5e-180 635.2 556 61.2
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 5.9e-180 634.8 558 61.6
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 7.7e-180 634.4 555 61.8
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.5e-178 630.2 557 61.8
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 5.5e-178 628.2 568 60.6
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 5.5e-178 628.2 562 61.2
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 2.7e-177 625.9 557 60.7
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 3.6e-177 625.5 555 62.3
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 2.3e-176 622.9 561 60.2
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 3.0e-176 622.5 553 61.1
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 5.7e-175 618.2 556 59.5
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 8.3e-174 614.4 532 63.5
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 5.4e-173 611.7 562 61.6
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 7.0e-173 611.3 466 68.2
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 5.9e-172 608.2 556 60.4
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 2.3e-171 606.3 556 58.5
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 8.6e-171 604.4 542 61.4
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 8.6e-171 604.4 573 58.1
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.5e-170 603.6 436 73.9
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 2.6e-167 592.8 555 61.3
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 4.1e-165 585.5 526 62.4
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.5e-162 577.0 412 72.8
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.5e-162 577.0 573 57.9
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 4.3e-162 575.5 585 54.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 9.5e-162 574.3 453 65.1
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 2.8e-161 572.8 524 62.4
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.0e-160 568.9 558 58.6
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 8.3e-158 561.2 559 56.7
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 4.3e-154 548.9 401 69.8
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 7.3e-154 548.1 562 55.7
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.4e-149 533.1 541 56.7
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 4.6e-148 528.9 384 69.8
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.7e-142 510.4 338 76.9
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 5.1e-139 498.8 554 51.4
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.2e-137 494.2 517 52.8
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 2.4e-136 490.0 467 59.7
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.8e-124 448.4 301 75.7
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.3e-113 414.5 456 46.1
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 2.1e-108 397.1 390 57.2
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 3.9e-107 392.9 315 70.2
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.1e-106 391.3 482 49.8
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.4e-95 353.2 364 54.4
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.9e-93 347.4 360 47.5
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.5e-86 322.4 291 60.8
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.7e-75 285.8 335 52.5
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 3.3e-74 283.5 190 75.8
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.2e-65 254.2 210 61.9
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 4.5e-63 246.5 284 53.2
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 1.7e-62 244.6 205 67.3
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.2e-53 213.4 155 71.0
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 1.4e-51 208.4 173 61.8
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.7e-49 201.4 176 64.2
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 9.5e-45 185.7 279 45.9
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 6.8e-27 126.3 430 25.1
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 7.8e-23 112.8 63 84.1
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.3e-21 107.5 63 81.0
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.1e-19 102.4 152 42.8
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.7e-17 95.1 65 70.8
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 8.4e-17 92.8 120 48.3
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 7.1e-16 89.7 51 82.4
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 6.0e-15 86.7 64 65.6
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 3.3e-13 80.9 179 29.1
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 9.6e-13 79.3 64 62.5
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.9e-11 73.2 79 51.9
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 9.9e-10 69.3 41 80.5
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 9.9e-10 69.3 41 80.5
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.9e-09 67.8 41 78.0
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.6e-07 62.0 57 57.9
Nitab4.5_0003733g0050 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.7e-06 58.5 42 66.7


User provided reference genes

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