Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 3.7e-243 844.3 402 100.0
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 3.3e-239 831.2 402 98.5
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.4e-213 746.1 402 88.8
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 5.3e-213 744.2 401 88.8
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 2.2e-211 738.8 406 86.7
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 1.2e-209 733.0 402 87.8
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 1.0e-208 729.9 402 86.3
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 5.1e-208 727.6 401 87.8
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 6.7e-208 727.2 403 85.9
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 1.5e-207 726.1 413 85.5
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 2.5e-207 725.3 403 85.6
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 4.3e-207 724.5 403 84.1
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 4.3e-207 724.5 417 82.7
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 4.3e-207 724.5 403 85.6
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 5.6e-207 724.2 403 85.4
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 7.4e-207 723.8 403 85.6
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 9.6e-207 723.4 403 84.9
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 1.6e-206 722.6 402 85.6
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 1.6e-206 722.6 401 86.0
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 3.7e-206 721.5 402 86.3
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 3.7e-206 721.5 408 84.3
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 6.2e-206 720.7 400 85.8
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 6.2e-206 720.7 403 84.9
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 8.1e-206 720.3 401 87.0
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 8.1e-206 720.3 399 86.5
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 1.1e-205 719.9 403 84.6
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 1.4e-205 719.5 403 86.8
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.4e-205 719.5 401 86.8
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 1.4e-205 719.5 401 86.8
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 2.4e-205 718.8 400 84.8
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 3.1e-205 718.4 403 85.1
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 3.1e-205 718.4 401 86.0
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 3.1e-205 718.4 402 85.3
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 4.0e-205 718.0 404 84.7
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 4.0e-205 718.0 403 83.4
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 4.0e-205 718.0 401 86.8
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 4.0e-205 718.0 401 85.5
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 5.3e-205 717.6 401 86.0
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 9.0e-205 716.8 402 85.3
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 3.4e-204 714.9 401 85.8
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 7.6e-204 713.8 391 87.0
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 1.0e-203 713.4 408 84.1
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 1.0e-203 713.4 401 85.0
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 1.0e-203 713.4 391 88.0
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 4.9e-203 711.1 402 84.6
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 6.5e-203 710.7 402 85.3
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 8.4e-203 710.3 395 84.6
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 5.5e-202 707.6 406 82.8
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 9.3e-202 706.8 404 84.2
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 1.2e-201 706.4 394 85.3
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 1.6e-201 706.1 402 83.3
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 2.1e-201 705.7 388 85.8
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 2.7e-201 705.3 432 79.6
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 2.7e-201 705.3 402 83.8
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 3.5e-201 704.9 401 83.3
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 3.5e-201 704.9 401 83.3
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 4.6e-201 704.5 399 85.2
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 4.6e-201 704.5 401 84.5
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 1.0e-200 703.4 390 85.1
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 1.3e-200 703.0 409 82.6
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 2.3e-200 702.2 390 87.7
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 3.9e-200 701.4 413 83.1
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 6.7e-200 700.7 395 83.8
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 8.7e-200 700.3 401 82.8
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 1.5e-199 699.5 401 83.8
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 5.7e-199 697.6 434 78.1
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 5.7e-199 697.6 399 83.0
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 1.8e-197 692.6 401 82.3
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 5.3e-197 691.0 403 82.1
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 1.2e-196 689.9 402 79.4
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 2.6e-196 688.7 402 80.8
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 2.6e-196 688.7 402 79.6
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 7.6e-196 687.2 402 79.4
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 7.6e-196 687.2 414 80.0
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 1.3e-195 686.4 402 79.6
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 1.3e-195 686.4 391 83.1
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 1.9e-194 682.6 399 81.2
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 7.2e-194 680.6 400 83.0
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 4.6e-193 677.9 402 81.8
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 1.8e-192 676.0 399 79.7
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 3.0e-192 675.2 403 81.1
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 1.1e-191 673.3 399 79.2
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 2.5e-191 672.2 400 79.8
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 9.7e-191 670.2 402 77.9
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 9.0e-189 663.7 396 80.8
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 1.0e-187 660.2 383 79.9
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 1.0e-187 660.2 383 79.9
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 1.3e-187 659.8 418 78.2
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 9.4e-186 653.7 385 79.5
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 3.6e-185 651.7 402 78.4
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 7.9e-185 650.6 357 85.4
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 5.1e-184 647.9 386 80.8
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 5.7e-183 644.4 401 78.1
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.1e-181 640.2 377 82.5
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 1.4e-181 639.8 406 75.1
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 6.9e-181 637.5 390 79.0
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 5.9e-180 634.4 379 81.0
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 9.4e-178 627.1 384 76.8
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 2.1e-177 625.9 384 76.6
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 2.3e-176 622.5 384 76.0
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 1.5e-175 619.8 411 75.9
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 2.0e-175 619.4 341 85.0
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 3.3e-175 618.6 373 77.7
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 7.4e-175 617.5 400 75.5
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 5.9e-172 607.8 401 76.8
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 1.4e-168 596.7 400 74.0
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 1.3e-166 590.1 354 78.5
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 3.5e-164 582.0 325 84.0
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 8.5e-163 577.4 398 70.6
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 3.2e-162 575.5 396 69.2
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 4.2e-162 575.1 404 70.8
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 1.8e-160 569.7 392 67.6
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 2.3e-160 569.3 305 89.8
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 5.2e-160 568.2 306 89.2
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 7.5e-159 564.3 394 68.5
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.0e-155 553.9 306 87.3
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 5.6e-146 521.5 400 63.5
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 6.1e-145 518.1 348 71.8
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 7.5e-143 511.1 389 63.2
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 3.6e-121 439.1 242 86.8
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 4.0e-104 382.5 208 87.5
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 1.4e-101 374.0 266 65.0
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 3.0e-91 339.7 187 85.0
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 1.4e-85 320.9 368 52.2
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 4.3e-82 309.3 218 73.4
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 2.4e-80 303.5 171 84.2
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 1.1e-77 294.7 161 84.5
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 5.1e-75 285.8 432 39.6
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 3.3e-74 283.1 223 61.9
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.1e-66 258.1 146 83.6
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 5.2e-59 232.6 142 77.5
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 3.3e-58 229.9 172 64.5
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 2.4e-40 170.6 190 51.6
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.6e-31 141.4 72 90.3
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 7.3e-21 105.9 199 38.7
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 3.5e-07 60.5 43 69.8


User provided reference genes

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