Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 4.1e-71 271.2 126 100.0
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.6e-67 259.2 126 96.0
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 4.7e-67 257.7 126 95.2
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 6.1e-67 257.3 126 94.4
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 8.0e-67 256.9 126 95.2
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 2.3e-66 255.4 126 93.7
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 2.3e-66 255.4 126 93.7
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 2.3e-66 255.4 126 93.7
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 2.3e-66 255.4 126 93.7
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 3.0e-66 255.0 126 92.9
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 3.0e-66 255.0 126 94.4
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 5.2e-66 254.2 126 92.9
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 5.2e-66 254.2 126 93.7
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 5.2e-66 254.2 126 92.1
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 5.2e-66 254.2 126 93.7
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 5.2e-66 254.2 126 94.4
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 6.8e-66 253.8 126 93.7
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 6.8e-66 253.8 126 93.7
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 8.8e-66 253.4 124 93.5
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 8.8e-66 253.4 124 93.5
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 8.8e-66 253.4 126 92.9
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 8.8e-66 253.4 126 92.9
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.9
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.9
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.9
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.9
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.1
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.9
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.9
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.9
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 92.9
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 92.9
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 92.9
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 92.9
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.9
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.9
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.9
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.9
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 92.9
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 92.9
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 92.1
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 92.1
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 91.3
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 91.3
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 91.3
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 4.4e-65 251.1 126 91.3
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 4.4e-65 251.1 126 91.3
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 7.5e-65 250.4 126 92.1
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 7.5e-65 250.4 126 90.5
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 9.8e-65 250.0 126 91.3
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.8e-65 250.0 126 92.1
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 9.8e-65 250.0 126 90.5
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.3e-64 249.6 126 91.3
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.7e-64 249.2 126 92.1
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 91.9
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 2.2e-64 248.8 124 92.7
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.2e-64 248.8 126 92.1
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.8e-64 248.4 126 91.3
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.8e-64 248.4 126 91.3
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.8e-64 248.4 126 91.3
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.7e-64 248.1 126 90.5
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.7e-64 248.1 126 90.5
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 4.9e-64 247.7 124 91.9
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 4.9e-64 247.7 126 91.3
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 6.3e-64 247.3 123 91.1
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 6.3e-64 247.3 126 91.3
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 6.3e-64 247.3 126 91.3
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 6.3e-64 247.3 126 91.3
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.1e-63 246.5 126 90.5
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.1e-63 246.5 126 90.5
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 1.4e-63 246.1 126 90.5
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 3.1e-63 245.0 126 90.5
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 4.1e-63 244.6 125 89.6
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.1e-63 244.6 125 89.6
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.1e-63 244.6 125 89.6
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 4.1e-63 244.6 126 89.7
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 5.4e-63 244.2 126 88.9
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 9.1e-63 243.4 126 88.9
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.2e-62 243.0 125 88.8
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 2.0e-62 242.3 126 88.9
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 2.0e-62 242.3 126 88.9
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.5e-62 241.5 124 88.7
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 3.5e-62 241.5 124 88.7
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.5e-62 241.1 124 88.7
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 4.5e-62 241.1 125 88.0
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 4.5e-62 241.1 126 87.3
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 5.9e-62 240.7 126 86.5
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 5.9e-62 240.7 126 88.1
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 5.9e-62 240.7 124 90.3
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 7.7e-62 240.4 126 88.1
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 1.0e-61 240.0 126 87.3
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 91.1
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 1.7e-61 239.2 126 87.3
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 1.7e-61 239.2 126 87.3
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 2.3e-61 238.8 126 86.5
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 3.8e-61 238.0 124 88.7
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 3.8e-61 238.0 124 88.7
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 3.8e-61 238.0 124 88.7
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 6.6e-61 237.3 125 86.4
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 1.5e-60 236.1 124 87.9
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 1.5e-60 236.1 124 87.9
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.5e-60 236.1 124 87.1
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 1.5e-60 236.1 126 84.9
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 4.2e-60 234.6 124 87.1
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 5.6e-60 234.2 124 87.1
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 5.6e-60 234.2 124 87.1
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 5.6e-60 234.2 124 87.1
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 5.6e-60 234.2 124 87.1
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 5.6e-60 234.2 124 87.1
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 7.2e-60 233.8 151 75.5
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 7.2e-60 233.8 171 69.0
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 9.5e-60 233.4 124 87.1
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 1.2e-59 233.0 131 84.0
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 2.1e-59 232.3 124 84.7
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 3.6e-59 231.5 117 90.6
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 3.6e-59 231.5 157 73.2
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 8.0e-59 230.3 121 88.4
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 8.0e-59 230.3 126 82.5
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 1.0e-58 229.9 123 86.2
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 1.4e-58 229.6 124 85.5
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 1.8e-58 229.2 119 89.9
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 1.8e-58 229.2 124 85.5
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 1.8e-58 229.2 119 89.9
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 2.3e-58 228.8 119 89.1
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 3.0e-58 228.4 126 81.0
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 3.4e-57 224.9 124 85.5
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.2e-56 222.2 120 84.2
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 8.3e-56 220.3 128 81.2
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 2.7e-54 215.3 112 90.2
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 4.6e-54 214.5 114 86.8
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 4.6e-54 214.5 126 75.4
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 3.9e-53 211.5 126 73.0
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 5.0e-53 211.1 109 89.0
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 8.6e-53 210.3 114 85.1
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.6e-51 206.1 108 88.9
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.9e-48 194.5 149 66.4
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 3.0e-45 185.3 94 89.4
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 1.9e-44 182.6 87 95.4
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 4.3e-44 181.4 124 73.4
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 4.7e-43 177.9 100 87.0
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 8.1e-43 177.2 82 97.6
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 1.8e-42 176.0 85 94.1
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 1.2e-41 173.3 82 96.3
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 7.5e-41 170.6 82 95.1
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 7.5e-41 170.6 82 95.1
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 1.9e-39 166.0 134 64.2
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.9e-39 166.0 83 91.6
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 3.2e-39 165.2 82 90.2
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 4.1e-39 164.9 126 65.9
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 7.1e-39 164.1 77 96.1
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 7.8e-38 160.6 110 71.8
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.3e-36 155.2 177 49.2
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 1.2e-35 153.3 78 91.0
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 2.3e-34 149.1 78 88.5
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 5.2e-34 147.9 124 61.3
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 2.9e-32 142.1 120 59.2
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 4.9e-32 141.4 78 84.6
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 2.4e-31 139.0 64 100.0
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 1.3e-29 133.3 75 84.0
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 1.5e-28 129.8 73 80.8
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 9.6e-28 127.1 58 98.3
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 5.8e-25 117.9 58 94.8
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 1.3e-24 116.7 123 52.0
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 1.3e-24 116.7 123 52.0
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 6.6e-21 104.4 57 86.0
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 9.3e-15 84.0 44 86.4
Solyc07g047890.4 Solanum lycopersicum HOM05D004304 ORTHO05D393077 9.3e-07 57.4 69 42.0


User provided reference genes

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