Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034251 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 7.5e-66 253.8 139 100.0
CSS0042453 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 7.5e-66 253.8 139 100.0
CSS0016849 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 1.1e-29 133.7 148 62.8
CSS0048960 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 3.3e-29 132.1 148 63.5
Thecc.03G112200 Theobroma cacao HOM05D008563 ORTHO05D009802 4.3e-21 105.1 164 44.5
Duzib084G1352 Durio zibethinus HOM05D008563 ORTHO05D009802 9.9e-18 94.0 165 46.1
Sed0012187 Sechium edule HOM05D008563 ORTHO05D009802 9.3e-16 87.4 157 45.2
Hma1.2p1_0744F.1_g211700 Hydrangea macrophylla HOM05D008563 ORTHO05D009802 7.8e-15 84.3 146 52.7
Gohir.D12G187700 Gossypium hirsutum HOM05D008563 ORTHO05D009802 3.0e-14 82.4 77 58.4
Gorai.008G201100 Gossypium raimondii HOM05D008563 ORTHO05D009802 3.0e-14 82.4 77 58.4
Nitab4.5_0000646g0100 Nicotiana tabacum HOM05D014920 ORTHO05D009802 5.1e-14 81.6 151 43.7
PGSC0003DMG400004059 Solanum tuberosum HOM05D014920 ORTHO05D009802 8.7e-14 80.9 154 43.5
Dinv36837 Davidia involucrata HOM05D008563 ORTHO05D009802 1.5e-13 80.1 146 50.7
Sed0005169 Sechium edule HOM05D008563 ORTHO05D009802 2.1e-12 76.3 150 42.0
Actinidia01421 Actinidia chinensis HOM05D008563 ORTHO05D009802 4.8e-12 75.1 136 44.9
COL.COLO4_28804 Corchorus olitorius HOM05D008563 ORTHO05D009802 4.8e-12 75.1 167 45.5
Gohir.D03G099300 Gossypium hirsutum HOM05D008563 ORTHO05D009802 8.1e-12 74.3 153 44.4
Medtr4g112870 Medicago truncatula HOM05D008563 ORTHO05D009802 8.1e-12 74.3 149 39.6
Actinidia35060 Actinidia chinensis HOM05D014692 ORTHO05D014734 1.4e-11 73.6 138 44.2
Gorai.003G104300 Gossypium raimondii HOM05D008563 ORTHO05D009802 1.4e-11 73.6 153 49.0
CiPaw.15G117600 Carya illinoinensis HOM05D008563 ORTHO05D009802 1.8e-11 73.2 160 38.1
TPR.G2004 Trifolium pratense HOM05D008563 ORTHO05D009802 5.3e-11 71.6 158 39.2
Nitab4.5_0002805g0110 Nicotiana tabacum HOM05D014920 ORTHO05D009802 6.9e-11 71.2 158 41.8
Potri.015G054900 Populus trichocarpa HOM05D008563 ORTHO05D009802 3.4e-10 68.9 138 47.1
Medtr2g058870 Medicago truncatula HOM05D008563 ORTHO05D009956 7.6e-10 67.8 163 41.7
TWI60G1620 Tripterygium wilfordii HOM05D014692 ORTHO05D014734 9.9e-10 67.4 78 48.7
Ca_02709_v3 Cicer arietinum L. HOM05D008563 ORTHO05D009956 1.3e-09 67.0 78 55.1
Aqoxy3G03789 Aquilegia oxysepala HOM05D018804 ORTHO05D009802 4.9e-09 65.1 126 38.9
PSO478G2273 Papaver somniferum HOM05D042328 ORTHO05D009956 8.4e-09 64.3 157 40.8
Lj4g0009196 Lotus japonicus HOM05D008563 ORTHO05D009802 1.1e-08 63.9 133 42.9
Nitab4.5_0004190g0010 Nicotiana tabacum HOM05D014920 ORTHO05D009802 1.4e-08 63.5 168 42.3
PSO017G1525 Papaver somniferum HOM05D042328 ORTHO05D009956 1.4e-08 63.5 157 40.1
Potri.004G108840 Populus trichocarpa HOM05D008889 ORTHO05D009956 1.4e-08 63.5 92 44.6
Nn3g17602 Nelumbo nucifera HOM05D008563 ORTHO05D009802 2.4e-08 62.8 157 43.9
Solyc06g069340.1 Solanum lycopersicum HOM05D014920 ORTHO05D009802 3.2e-08 62.4 149 39.6
PGSC0003DMG400024516 Solanum tuberosum HOM05D014920 ORTHO05D009802 3.2e-08 62.4 148 37.2
Sabra15G0079800 Salix brachista HOM05D008563 ORTHO05D009802 4.2e-08 62.0 122 50.0
Atru.chr11.1516 Acer truncatum HOM05D018013 ORTHO05D013371 5.4e-08 61.6 156 38.5
Gohir.A03G072700 Gossypium hirsutum HOM05D008563 ORTHO05D009802 5.4e-08 61.6 154 42.2
Sopen03g033700 Solanum pennellii HOM05D014920 ORTHO05D009802 5.4e-08 61.6 158 36.1
Psat5g232520 Pisum sativum HOM05D008563 ORTHO05D009802 7.1e-08 61.2 160 36.9
Lsat_1_v5_gn_4_113140 Lactuca sativa HOM05D038017 ORTHO05D009802 9.3e-08 60.8 77 53.2
Psat4g045520 Pisum sativum HOM05D008563 ORTHO05D009802 9.3e-08 60.8 150 38.0
QL10p021529 Quercus lobata HOM05D008563 ORTHO05D009802 9.3e-08 60.8 149 43.0
DCAR_011590 Daucus carota HOM05D065511 ORTHO05D009802 1.2e-07 60.5 135 40.0
Nn4g23603 Nelumbo nucifera HOM05D017299 ORTHO05D009802 1.2e-07 60.5 172 40.7
Nitab4.5_0001432g0130 Nicotiana tabacum HOM05D014920 ORTHO05D009802 1.6e-07 60.1 160 38.8
TPR.G15318 Trifolium pratense HOM05D008563 ORTHO05D009802 2.1e-07 59.7 107 46.7
CiPaw.16G081000 Carya illinoinensis HOM05D008563 ORTHO05D009802 2.7e-07 59.3 154 43.5
Lj1g0007009 Lotus japonicus HOM05D008563 ORTHO05D009802 2.7e-07 59.3 116 44.8
AT5G38790 Arabidopsis thaliana HOM05D009227 ORTHO05D009956 4.6e-07 58.5 103 40.8
Sabra17G0089900 Salix brachista HOM05D008889 ORTHO05D009956 4.6e-07 58.5 104 40.4
unitig_21.g20864 Utricularia gibba HOM05D011353 ORTHO05D009956 4.6e-07 58.5 111 44.1
Gohir.A13G093400 Gossypium hirsutum HOM05D018013 ORTHO05D013371 6.0e-07 58.2 78 51.3
Oeu054579.1 Olea europaea HOM05D011353 ORTHO05D009956 7.9e-07 57.8 137 36.5
Sopen05g006040 Solanum pennellii HOM05D011353 ORTHO05D009802 7.9e-07 57.8 142 36.6
Glyma.04G157900 Glycine max HOM05D008563 ORTHO05D009956 1.3e-06 57.0 92 45.7
Lj1g0003987 Lotus japonicus HOM05D008889 ORTHO05D009956 1.3e-06 57.0 124 41.9
Solyc05g010270.1 Solanum lycopersicum HOM05D011353 ORTHO05D009802 1.3e-06 57.0 142 36.6
Phvul.008G023501 Phaseolus vulgaris HOM05D008889 ORTHO05D009956 1.7e-06 56.6 105 39.0
Ciclev10013380m.g Citrus clementina HOM05D008889 ORTHO05D009956 2.3e-06 56.2 105 41.0
Gorai.013G103000 Gossypium raimondii HOM05D018013 ORTHO05D013371 2.3e-06 56.2 82 47.6
unitig_744.g24288 Utricularia gibba HOM05D009227 ORTHO05D009956 2.3e-06 56.2 117 41.0
VMungo1309G1047 Vigna mungo HOM05D008563 ORTHO05D009802 2.3e-06 56.2 80 53.8
Lsat_1_v5_gn_0_39381 Lactuca sativa HOM05D001719 ORTHO05D008373 3.0e-06 55.8 130 41.5
Oeu024138.1 Olea europaea HOM05D011353 ORTHO05D009956 3.0e-06 55.8 80 47.5
Potri.017G107000 Populus trichocarpa HOM05D008889 ORTHO05D009956 3.0e-06 55.8 117 38.5
Sopen06g026600 Solanum pennellii HOM05D014920 ORTHO05D009802 3.0e-06 55.8 147 39.5
PGSC0003DMG400025096 Solanum tuberosum HOM05D011353 ORTHO05D009802 3.0e-06 55.8 143 34.3
TWI60G1323 Tripterygium wilfordii HOM05D008889 ORTHO05D009956 3.0e-06 55.8 110 40.9
FAN07G0328 Fragaria x ananassa HOM05D014692 ORTHO05D014734 3.9e-06 55.5 128 40.6
Glyma.06G207600 Glycine max HOM05D008563 ORTHO05D009802 3.9e-06 55.5 143 46.2
Aa31LG9G16880 Aethionema arabicum HOM05D009227 ORTHO05D009956 5.1e-06 55.1 96 38.5
AL7G51640 Arabidopsis lyrata HOM05D009227 ORTHO05D009956 5.1e-06 55.1 100 44.0
CAN.G982.29 Capsicum annuum HOM05D000541 ORTHO05D000137 5.1e-06 55.1 129 39.5
ClCG06G015330 Citrullus lanatus HOM05D008563 ORTHO05D009802 8.7e-06 54.3 146 42.5
Manes.05G115400 Manihot esculenta HOM05D008563 ORTHO05D009802 8.7e-06 54.3 150 44.0


User provided reference genes

Program Settings