Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042429 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 5.5e-29 130.2 61 100.0
Actinidia19246 Actinidia chinensis HOM05D000921 ORTHO05D004782 6.7e-19 96.7 60 75.0
Atru.chr13.992 Acer truncatum HOM05D000921 ORTHO05D004782 3.4e-15 84.3 60 66.7
vmacro21344 Vaccinium macrocarpon HOM05D000921 ORTHO05D004782 4.5e-15 84.0 53 71.7
Rhsim06G0071200 Rhododendron simsii HOM05D000921 ORTHO05D004782 7.7e-15 83.2 58 67.2
GSVIVG01009194001 Vitis vinifera HOM05D000921 ORTHO05D004782 1.7e-14 82.0 60 63.3
Dinv42602 Davidia involucrata HOM05D000921 ORTHO05D004782 6.5e-14 80.1 60 63.3
TAR381G0975 Trochodendron aralioides HOM05D000921 ORTHO05D004782 2.5e-13 78.2 60 60.0
Aqoxy6G00846 Aquilegia oxysepala HOM05D000921 ORTHO05D004782 3.2e-13 77.8 60 61.7
Ciclev10000002m.g Citrus clementina HOM05D000921 ORTHO05D004782 4.2e-13 77.4 60 61.7
Cpa.g.sc21.32 Carica papaya HOM05D000921 ORTHO05D004782 1.6e-12 75.5 60 58.3
Haze_22475 Corylus avellana HOM05D000921 ORTHO05D004782 1.0e-11 72.8 60 58.3
QL09p018095 Quercus lobata HOM05D000921 ORTHO05D004782 8.8e-11 69.7 60 56.7
Thecc.08G072600 Theobroma cacao HOM05D000921 ORTHO05D004782 1.1e-10 69.3 60 58.3
Gohir.A06G031500 Gossypium hirsutum HOM05D000921 ORTHO05D004782 1.5e-10 68.9 60 60.0
Gohir.D06G030750 Gossypium hirsutum HOM05D000921 ORTHO05D004782 1.5e-10 68.9 60 60.0
Duzib116G0480 Durio zibethinus HOM05D000921 ORTHO05D004782 3.3e-10 67.8 60 60.0
CiPaw.07G164000 Carya illinoinensis HOM05D000921 ORTHO05D004782 4.4e-10 67.4 60 55.0
Gorai.010G033800 Gossypium raimondii HOM05D000921 ORTHO05D004782 5.7e-10 67.0 60 58.3
Manes.18G056822 Manihot esculenta HOM05D000921 ORTHO05D004782 1.3e-09 65.9 60 58.3
Sabra02G0087600 Salix brachista HOM05D000921 ORTHO05D004782 2.2e-09 65.1 54 55.6
Cc10_g08450 Coffea canephora HOM05D000921 ORTHO05D004782 2.8e-09 64.7 58 53.4
DCAR_012852 Daucus carota HOM05D000921 ORTHO05D004782 6.3e-09 63.5 59 52.5
RcHm_v2.0_Chr7g0235181 Rosa chinensis HOM05D000921 ORTHO05D004782 6.3e-09 63.5 60 55.0
COL.COLO4_35265 Corchorus olitorius HOM05D000921 ORTHO05D004782 8.2e-09 63.2 60 58.3
Potri.002G111000 Populus trichocarpa HOM05D000921 ORTHO05D004782 1.4e-08 62.4 60 51.7
CANSAT54G2772 Cannabis sativa HOM05D000921 ORTHO05D004782 1.8e-08 62.0 60 55.0
FAN13G0958 Fragaria x ananassa HOM05D000921 ORTHO05D004782 1.8e-08 62.0 60 51.7
FvH4_5g34530 Fragaria vesca HOM05D000921 ORTHO05D004782 2.4e-08 61.6 60 51.7
HanXRQChr05g0163481 Helianthus annuus HOM05D000921 ORTHO05D004782 3.1e-08 61.2 55 60.0
Prupe.1G534000 Prunus persica HOM05D000921 ORTHO05D004782 3.1e-08 61.2 52 59.6
Gohir.D02G086100 Gossypium hirsutum HOM05D000921 ORTHO05D004782 4.1e-08 60.8 60 56.7
Gorai.005G097000 Gossypium raimondii HOM05D000921 ORTHO05D004782 4.1e-08 60.8 60 56.7
MD15G1387600 Malus domestica HOM05D000921 ORTHO05D004782 5.3e-08 60.5 53 56.6
Lsat_1_v5_gn_6_107401 Lactuca sativa HOM05D000921 ORTHO05D004782 6.9e-08 60.1 46 60.9
Lj4A739G26 Lonicera japonica HOM05D000921 ORTHO05D004782 9.1e-08 59.7 51 49.0
Eucgr.F00430 Eucalyptus grandis HOM05D000921 ORTHO05D004782 1.2e-07 59.3 52 51.9
FAN08G1747 Fragaria x ananassa HOM05D000921 ORTHO05D004782 1.5e-07 58.9 53 52.8
FAN18G1361 Fragaria x ananassa HOM05D000921 ORTHO05D004782 1.5e-07 58.9 53 52.8
ECA246G1489 Erigeron canadensis HOM05D000921 ORTHO05D004782 2.0e-07 58.5 55 56.4
PGR042G3444 Punica granatum HOM05D000921 ORTHO05D004782 4.5e-07 57.4 54 51.9
TWI56G0737 Tripterygium wilfordii HOM05D000921 ORTHO05D004782 4.5e-07 57.4 60 50.0
MELO3C003512.2 Cucumis melo HOM05D000921 ORTHO05D004782 1.3e-06 55.8 42 64.3
CsaV3_3G048070 Cucumis sativus L. HOM05D000921 ORTHO05D004782 1.3e-06 55.8 42 64.3
AUR62014358 Chenopodium quinoa HOM05D000921 ORTHO05D004782 2.9e-06 54.7 54 53.7
Nn5g29852 Nelumbo nucifera HOM05D000921 ORTHO05D004782 2.9e-06 54.7 68 45.6
Ah.05g171400 Amaranthus hybridus HOM05D000921 ORTHO05D004782 3.8e-06 54.3 57 47.4
MSTRG.24432 Avicennia marina HOM05D000921 ORTHO05D004782 5.0e-06 53.9 52 42.3
AUR62019100 Chenopodium quinoa HOM05D000921 ORTHO05D004782 5.0e-06 53.9 51 52.9
ClCG11G014650 Citrullus lanatus HOM05D000921 ORTHO05D004782 5.0e-06 53.9 42 61.9
EL10Ac1g00502 Beta vulgaris HOM05D000921 ORTHO05D004782 8.5e-06 53.1 58 50.0


User provided reference genes

Program Settings