Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030717 Camellia sinensis var. sinensis HOM05D000730 ORTHO05D018831 1.1e-56 223.0 112 100.0
CSS0042423 Camellia sinensis var. sinensis HOM05D000730 ORTHO05D018831 1.1e-56 223.0 112 100.0
Haze_08931 Corylus avellana HOM05D000730 ORTHO05D000578 7.0e-22 107.5 76 68.4
SGA_v2.0_scaffold343G49460 Striga asiatica HOM05D000730 ORTHO05D000578 2.6e-21 105.5 83 57.8
COL.COLO4_05255 Corchorus olitorius HOM05D000730 ORTHO05D000578 4.5e-21 104.8 77 61.0
Ciclev10023740m.g Citrus clementina HOM05D000730 ORTHO05D000578 1.0e-20 103.6 77 59.7
Manes.01G065400 Manihot esculenta HOM05D000730 ORTHO05D000578 1.7e-20 102.8 81 59.3
Cc08_g14160 Coffea canephora HOM05D000730 ORTHO05D000578 2.2e-20 102.4 87 59.8
Sp6g05800 Schrenkiella parvula HOM05D000730 ORTHO05D000578 2.2e-20 102.4 76 64.5
Nitab4.5_0003924g0080 Nicotiana tabacum HOM05D000730 ORTHO05D000578 5.0e-20 101.3 80 60.0
Duzib068G0713 Durio zibethinus HOM05D000730 ORTHO05D000578 6.5e-20 100.9 77 61.0
Solyc08g080520.4 Solanum lycopersicum HOM05D000730 ORTHO05D000578 6.5e-20 100.9 77 61.0
Sopen08g028840 Solanum pennellii HOM05D000730 ORTHO05D000578 6.5e-20 100.9 77 61.0
Thecc.03G272900 Theobroma cacao HOM05D000730 ORTHO05D000578 8.5e-20 100.5 77 58.4
AL6G46270 Arabidopsis lyrata HOM05D000730 ORTHO05D000578 1.5e-19 99.8 76 60.5
A09p27470 Brassica napus HOM05D000730 ORTHO05D000578 2.5e-19 99.0 77 63.6
BraA09t38315Z Brassica rapa HOM05D000730 ORTHO05D000578 2.5e-19 99.0 77 63.6
Hma1.2p1_1468F.1_g285520 Hydrangea macrophylla HOM05D000730 ORTHO05D018831 2.5e-19 99.0 118 48.3
Prupe.5G093000 Prunus persica HOM05D000730 ORTHO05D000578 2.5e-19 99.0 79 64.6
GSVIVG01019827001 Vitis vinifera HOM05D000730 ORTHO05D000578 2.5e-19 99.0 78 61.5
Gohir.D03G153300 Gossypium hirsutum HOM05D000730 ORTHO05D000578 4.2e-19 98.2 77 61.0
QL12p017589 Quercus lobata HOM05D000730 ORTHO05D000578 7.2e-19 97.4 76 63.2
TAR375G0386 Trochodendron aralioides HOM05D000730 ORTHO05D000578 7.2e-19 97.4 84 61.9
AT4G11670 Arabidopsis thaliana HOM05D000730 ORTHO05D000578 1.6e-18 96.3 76 59.2
CARHR254700 Cardamine hirsuta HOM05D000730 ORTHO05D000578 1.6e-18 96.3 76 60.5
Sabra01G0081900 Salix brachista HOM05D000730 ORTHO05D000578 1.6e-18 96.3 81 53.1
Gorai.003G160900 Gossypium raimondii HOM05D000730 ORTHO05D000578 2.1e-18 95.9 77 59.7
C09p34790 Brassica napus HOM05D000730 ORTHO05D000578 2.7e-18 95.5 77 62.3
BolC9t56324H Brassica oleracea HOM05D000730 ORTHO05D000578 2.7e-18 95.5 77 62.3
ClCG00G000280 Citrullus lanatus HOM05D000730 ORTHO05D000578 2.7e-18 95.5 79 62.0
ClCG00G001770 Citrullus lanatus HOM05D000730 ORTHO05D000578 2.7e-18 95.5 79 62.0
MELO3C014023.2 Cucumis melo HOM05D000730 ORTHO05D000578 4.7e-18 94.7 79 60.8
Peaxi162Scf00714g00334 Petunia axillaris HOM05D000730 ORTHO05D000578 4.7e-18 94.7 77 55.8
Thhalv10028371m.g Eutrema salsugineum HOM05D000730 ORTHO05D000578 6.1e-18 94.4 76 60.5
Potri.001G108400 Populus trichocarpa HOM05D000730 ORTHO05D000578 6.1e-18 94.4 82 56.1
Migut.A00938 Erythranthe guttata HOM05D000730 ORTHO05D000578 3.0e-17 92.0 82 52.4
MD00G1110400 Malus domestica HOM05D000730 ORTHO05D000578 1.2e-16 90.1 85 57.6
AUR62010634 Chenopodium quinoa HOM05D000730 ORTHO05D000578 1.5e-16 89.7 82 56.1
AUR62017277 Chenopodium quinoa HOM05D000730 ORTHO05D000578 1.5e-16 89.7 82 56.1
CsaV3_3G003550 Cucumis sativus L. HOM05D000730 ORTHO05D000578 1.5e-16 89.7 79 58.2
Oeu029784.2 Olea europaea HOM05D000730 ORTHO05D000578 1.5e-16 89.7 82 53.7
Lj8A236G37 Lonicera japonica HOM05D000730 ORTHO05D033907 2.6e-16 89.0 96 54.2
CAN.G981.11 Capsicum annuum HOM05D000730 ORTHO05D018831 3.3e-16 88.6 77 53.2
SalBow6G3932 Salvia bowleyana HOM05D000730 ORTHO05D000578 3.3e-16 88.6 81 54.3
Sed0026891 Sechium edule HOM05D000730 ORTHO05D000578 3.3e-16 88.6 79 57.0
Sc22g0000270 Simmondsia chinensis HOM05D000730 ORTHO05D000578 5.7e-16 87.8 82 56.1
unitig_52.g17227 Utricularia gibba HOM05D000730 ORTHO05D018831 7.5e-16 87.4 81 49.4
MBI12_g43910_MAGBIO Magnolia biondii HOM05D000730 ORTHO05D000578 9.7e-16 87.0 76 56.6
Nn6g34206 Nelumbo nucifera HOM05D000730 ORTHO05D000578 1.3e-15 86.7 76 57.9
TWI81G0743 Tripterygium wilfordii HOM05D000730 ORTHO05D000578 1.7e-15 86.3 77 61.0
Hund28788 Selenicereus undatus HOM05D000730 ORTHO05D018831 2.8e-15 85.5 77 55.8
Hund28789 Selenicereus undatus HOM05D000730 ORTHO05D018831 2.8e-15 85.5 77 55.8
Actinidia02031 Actinidia chinensis HOM05D000730 ORTHO05D000578 3.7e-15 85.1 77 58.4
Ah.12g057520 Amaranthus hybridus HOM05D000730 ORTHO05D000578 8.2e-15 84.0 82 50.0
THA.LOC104806377 Tarenaya hassleriana HOM05D000730 ORTHO05D000578 1.4e-14 83.2 76 52.6
BcaC04g21166 Brassica carinata HOM05D000730 ORTHO05D000578 7.0e-14 80.9 76 55.3
DCAR_004665 Daucus carota HOM05D000730 ORTHO05D000578 1.6e-13 79.7 83 48.2
Aa31LG9G10680 Aethionema arabicum HOM05D000730 ORTHO05D000578 2.0e-13 79.3 77 54.5
Aqoxy5G03962 Aquilegia oxysepala HOM05D000730 ORTHO05D000578 2.7e-13 79.0 84 48.8
CDE09G0864 Ceratophyllum demersum HOM05D000730 ORTHO05D000578 4.5e-13 78.2 84 50.0
HanXRQChr06g0165441 Helianthus annuus HOM05D000730 ORTHO05D000578 5.9e-13 77.8 78 59.0
PSO339G1614 Papaver somniferum HOM05D000730 ORTHO05D000578 5.9e-13 77.8 80 51.2
PSO384G0089 Papaver somniferum HOM05D000730 ORTHO05D000578 5.9e-13 77.8 80 51.2
SalBow5G1057 Salvia bowleyana HOM05D000730 ORTHO05D000578 5.9e-13 77.8 94 44.7
Eucgr.J00067 Eucalyptus grandis HOM05D000730 ORTHO05D000578 1.0e-12 77.0 81 50.6
SMO116G0331 Selaginella moellendorffii HOM05D000730 ORTHO05D000578 1.0e-12 77.0 78 50.0
PGR044G0565 Punica granatum HOM05D000730 ORTHO05D000578 1.7e-12 76.3 81 49.4
ATR0757G158 Amborella trichopoda HOM05D000730 ORTHO05D000578 2.2e-12 75.9 76 46.1
AUR62031742 Chenopodium quinoa HOM05D000730 ORTHO05D000578 2.2e-12 75.9 81 48.1
AUR62032627 Chenopodium quinoa HOM05D000730 ORTHO05D000578 2.2e-12 75.9 81 48.1
FvH4_5g01750 Fragaria vesca HOM05D000730 ORTHO05D000578 3.8e-12 75.1 80 51.2
ClCG10G003540 Citrullus lanatus HOM05D000730 ORTHO05D000578 5.0e-12 74.7 58 63.8
Cc00_g07550 Coffea canephora HOM05D000730 ORTHO05D000578 5.0e-12 74.7 81 48.1
Nn7g36786 Nelumbo nucifera HOM05D000730 ORTHO05D000578 5.0e-12 74.7 79 49.4
Mapoly0125s0045 Marchantia polymorpha HOM05D000730 ORTHO05D000578 6.5e-12 74.3 74 50.0
Sc10g0004540 Simmondsia chinensis HOM05D000730 ORTHO05D000578 6.5e-12 74.3 81 48.1
SGA_v2.0_scaffold124G33604 Striga asiatica HOM05D000730 ORTHO05D000578 6.5e-12 74.3 81 46.9
Pp3c7_24310 Physcomitrium patens HOM05D000730 ORTHO05D000578 1.5e-11 73.2 74 48.6
CANSAT56G2780 Cannabis sativa HOM05D000730 ORTHO05D000578 1.9e-11 72.8 81 48.1
Dinv44710 Davidia involucrata HOM05D000730 ORTHO05D000578 1.9e-11 72.8 81 48.1
Migut.B01242 Erythranthe guttata HOM05D000730 ORTHO05D000578 1.9e-11 72.8 76 47.4
Sed0013589 Sechium edule HOM05D000730 ORTHO05D000578 2.5e-11 72.4 81 45.7
MELO3C012490.2 Cucumis melo HOM05D000730 ORTHO05D000578 3.2e-11 72.0 81 45.7
FAN08G1404 Fragaria x ananassa HOM05D000730 ORTHO05D000578 3.2e-11 72.0 90 47.8
MBI19_g36134_MAGBIO Magnolia biondii HOM05D000730 ORTHO05D000578 3.2e-11 72.0 79 45.6
Peaxi162Scf00082g00018 Petunia axillaris HOM05D000730 ORTHO05D000578 3.2e-11 72.0 81 46.9
Psat4g145160 Pisum sativum HOM05D000730 ORTHO05D000578 3.2e-11 72.0 81 46.9
GSVIVG01036645001 Vitis vinifera HOM05D000730 ORTHO05D000578 3.2e-11 72.0 81 44.4
BcaNung04208 Brassica carinata HOM05D000730 ORTHO05D000578 4.2e-11 71.6 81 43.2
A10p28770 Brassica napus HOM05D000730 ORTHO05D000578 4.2e-11 71.6 81 43.2
C09p69110 Brassica napus HOM05D000730 ORTHO05D000578 4.2e-11 71.6 81 43.2
BolC9t59655H Brassica oleracea HOM05D000730 ORTHO05D000578 4.2e-11 71.6 81 43.2
BraA10t44924Z Brassica rapa HOM05D000730 ORTHO05D000578 4.2e-11 71.6 81 43.2
Gohir.D05G284200 Gossypium hirsutum HOM05D000730 ORTHO05D000578 4.2e-11 71.6 81 46.9
Gorai.009G298800 Gossypium raimondii HOM05D000730 ORTHO05D000578 4.2e-11 71.6 81 46.9
Lsat_1_v5_gn_3_8441 Lactuca sativa HOM05D000730 ORTHO05D000578 4.2e-11 71.6 77 53.2
Solyc01g096540.4 Solanum lycopersicum HOM05D000730 ORTHO05D000578 4.2e-11 71.6 81 46.9
Sopen01g040270 Solanum pennellii HOM05D000730 ORTHO05D000578 4.2e-11 71.6 81 46.9
TPR.G8523 Trifolium pratense HOM05D000730 ORTHO05D000578 4.2e-11 71.6 81 46.9
CsaV3_5G036910 Cucumis sativus L. HOM05D000730 ORTHO05D000578 5.5e-11 71.2 81 45.7
Lj9A659G48 Lonicera japonica HOM05D000730 ORTHO05D000578 5.5e-11 71.2 81 45.7
Medtr8g040190 Medicago truncatula HOM05D000730 ORTHO05D000578 5.5e-11 71.2 81 46.9
Hund15746 Selenicereus undatus HOM05D000730 ORTHO05D000578 5.5e-11 71.2 76 48.7
EL10Ac5g12746 Beta vulgaris HOM05D000730 ORTHO05D000578 7.2e-11 70.9 83 49.4
DCAR_006604 Daucus carota HOM05D000730 ORTHO05D000578 7.2e-11 70.9 76 50.0
RcHm_v2.0_Chr7g0198971 Rosa chinensis HOM05D000730 ORTHO05D000578 7.2e-11 70.9 82 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4217 Anthoceros agrestis HOM05D000730 ORTHO05D000578 9.4e-11 70.5 74 45.9
Aqoxy2G00416 Aquilegia oxysepala HOM05D000730 ORTHO05D000578 9.4e-11 70.5 79 45.6
Carub.0006s0590 Capsella rubella HOM05D000730 ORTHO05D000578 1.2e-10 70.1 81 43.2
COL.COLO4_20721 Corchorus olitorius HOM05D000730 ORTHO05D000578 1.2e-10 70.1 81 45.7
Duzib128G1742 Durio zibethinus HOM05D000730 ORTHO05D000578 1.2e-10 70.1 81 45.7
Manes.04G156900 Manihot esculenta HOM05D000730 ORTHO05D000578 1.2e-10 70.1 80 47.5
PGR042G2616 Punica granatum HOM05D000730 ORTHO05D000578 1.2e-10 70.1 77 50.6
Zm00001eb285140 Zea mays HOM05D000730 ORTHO05D000578 1.2e-10 70.1 74 48.6
arahy.Tifrunner.gnm1.ann1.8I68MQ Arachis hypogaea HOM05D000730 ORTHO05D000578 1.6e-10 69.7 81 45.7
arahy.Tifrunner.gnm1.ann1.H567TY Arachis hypogaea HOM05D000730 ORTHO05D000578 1.6e-10 69.7 81 45.7
CSS0025631 Camellia sinensis var. sinensis HOM05D000730 ORTHO05D000578 1.6e-10 69.7 84 45.2
Haze_03002 Corylus avellana HOM05D000730 ORTHO05D000578 1.6e-10 69.7 79 45.6
FAN04G2748 Fragaria x ananassa HOM05D000730 ORTHO05D000578 1.6e-10 69.7 89 47.2
Gohir.A05G283200 Gossypium hirsutum HOM05D000730 ORTHO05D000578 1.6e-10 69.7 81 45.7
Prupe.2G042100 Prunus persica HOM05D000730 ORTHO05D000578 1.6e-10 69.7 76 47.4
THA.LOC104799323 Tarenaya hassleriana HOM05D000730 ORTHO05D000578 1.6e-10 69.7 81 44.4
Thecc.10G145500 Theobroma cacao HOM05D000730 ORTHO05D000578 1.6e-10 69.7 81 44.4
TWI60G0879 Tripterygium wilfordii HOM05D000730 ORTHO05D000578 1.6e-10 69.7 81 45.7
Duzib114G0880 Durio zibethinus HOM05D000730 ORTHO05D000578 2.1e-10 69.3 81 45.7
Glyma.13G192900 Glycine max HOM05D000730 ORTHO05D000578 2.1e-10 69.3 81 45.7
Glyma.15G230600 Glycine max HOM05D000730 ORTHO05D000578 2.1e-10 69.3 81 45.7
Phvul.011G201400 Phaseolus vulgaris HOM05D000730 ORTHO05D000578 2.1e-10 69.3 81 45.7
VMungo1127G0979 Vigna mungo HOM05D000730 ORTHO05D000578 2.1e-10 69.3 81 45.7
CAN.G134.13 Capsicum annuum HOM05D000730 ORTHO05D000578 2.7e-10 68.9 81 45.7
ECA246G5324 Erigeron canadensis HOM05D000730 ORTHO05D000578 2.7e-10 68.9 83 50.6
MD07G1046600 Malus domestica HOM05D000730 ORTHO05D000578 2.7e-10 68.9 81 44.4
Nitab4.5_0002838g0080 Nicotiana tabacum HOM05D000730 ORTHO05D000578 2.7e-10 68.9 76 46.1
Nitab4.5_0005420g0020 Nicotiana tabacum HOM05D000730 ORTHO05D000578 2.7e-10 68.9 76 46.1
Sp6g35900 Schrenkiella parvula HOM05D000730 ORTHO05D000578 2.7e-10 68.9 81 42.0
BcaC06g32528 Brassica carinata HOM05D000730 ORTHO05D000578 3.6e-10 68.6 81 42.0
Ciclev10003518m.g Citrus clementina HOM05D000730 ORTHO05D000578 3.6e-10 68.6 81 45.7
Rhsim07G0068600 Rhododendron simsii HOM05D000730 ORTHO05D000578 3.6e-10 68.6 81 44.4
RcHm_v2.0_Chr1g0326411 Rosa chinensis HOM05D000730 ORTHO05D000578 3.6e-10 68.6 81 44.4
FvH4_7g03630 Fragaria vesca HOM05D000730 ORTHO05D000578 4.7e-10 68.2 81 43.2
FAN03G3014 Fragaria x ananassa HOM05D000730 ORTHO05D000578 4.7e-10 68.2 81 43.2
FAN06G3967 Fragaria x ananassa HOM05D000730 ORTHO05D000578 4.7e-10 68.2 81 43.2
FAN10G2667 Fragaria x ananassa HOM05D000730 ORTHO05D000578 4.7e-10 68.2 81 43.2
Lalb_Chr03g0032161 Lupinus albus HOM05D000730 ORTHO05D000578 4.7e-10 68.2 81 45.7
Actinidia06224 Actinidia chinensis HOM05D000730 ORTHO05D000578 6.1e-10 67.8 81 44.4
Lsat_1_v5_gn_7_31081 Lactuca sativa HOM05D000730 ORTHO05D000578 6.1e-10 67.8 81 43.2
Lalb_Chr19g0132961 Lupinus albus HOM05D000730 ORTHO05D000578 6.1e-10 67.8 81 44.4
MD02G1278500 Malus domestica HOM05D000730 ORTHO05D000578 6.1e-10 67.8 81 43.2
Cpa.g.sc169.47 Carica papaya HOM05D000730 ORTHO05D000578 8.0e-10 67.4 82 47.6
CiPaw.13G015400 Carya illinoinensis HOM05D000730 ORTHO05D000578 8.0e-10 67.4 79 45.6
Potri.001G030100 Populus trichocarpa HOM05D000730 ORTHO05D000578 8.0e-10 67.4 81 43.2
AL6G17130 Arabidopsis lyrata HOM05D000730 ORTHO05D000578 1.0e-09 67.0 81 40.7
AT5G06970 Arabidopsis thaliana HOM05D000730 ORTHO05D000578 1.0e-09 67.0 81 40.7
CARHR206170 Cardamine hirsuta HOM05D000730 ORTHO05D000578 1.0e-09 67.0 81 40.7
Atru.chr12.1287 Acer truncatum HOM05D000730 ORTHO05D000578 1.8e-09 66.2 74 47.3
Eucgr.E00552 Eucalyptus grandis HOM05D000730 ORTHO05D000578 1.8e-09 66.2 76 46.1
Lj3g0012169 Lotus japonicus HOM05D000730 ORTHO05D000578 1.8e-09 66.2 81 43.2
HanXRQChr04g0119551 Helianthus annuus HOM05D000730 ORTHO05D000578 4.0e-09 65.1 81 43.2
ECA236G3986 Erigeron canadensis HOM05D000730 ORTHO05D000578 6.8e-09 64.3 81 42.0
CANSAT21G0309 Cannabis sativa HOM05D000730 ORTHO05D000578 1.5e-08 63.2 77 46.8
Os04g0568850 Oryza sativa ssp. japonica HOM05D000730 ORTHO05D018831 2.0e-08 62.8 79 45.6
EL10Ac2g02767 Beta vulgaris HOM05D000730 ORTHO05D000578 2.6e-08 62.4 81 44.4
Lalb_Chr01g0007391 Lupinus albus HOM05D000730 ORTHO05D000578 4.4e-08 61.6 81 40.7
unitig_749.g14334 Utricularia gibba HOM05D000730 ORTHO05D000578 9.8e-08 60.5 71 47.9
Zm00001eb073730 Zea mays HOM05D000730 ORTHO05D000578 9.8e-08 60.5 77 41.6
CBR_g23529 Chara braunii HOM05D000730 ORTHO05D000578 1.7e-07 59.7 74 41.9
HPP92_007385 Vanilla planifolia HOM05D000730 ORTHO05D000578 1.1e-06 57.0 76 43.4
Thhalv10012512m.g Eutrema salsugineum HOM05D000730 ORTHO05D000578 5.4e-06 54.7 81 35.8


User provided reference genes

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