Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 3.6e-29 131.0 69 100.0
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 2.6e-11 71.6 50 76.0
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 1.3e-10 69.3 50 78.0
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 1.7e-10 68.9 49 71.4
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 4.9e-10 67.4 45 75.6
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 8.4e-10 66.6 49 75.5
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 8.4e-10 66.6 45 82.2
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 1.4e-09 65.9 42 85.7
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 1.9e-09 65.5 50 76.0
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 2.4e-09 65.1 46 82.6
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 3.2e-09 64.7 47 70.2
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 3.2e-09 64.7 50 74.0
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 3.2e-09 64.7 49 69.4
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 9.3e-09 63.2 49 69.4
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 1.2e-08 62.8 49 69.4
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 1.2e-08 62.8 51 70.6
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 1.2e-08 62.8 45 73.3
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 1.2e-08 62.8 44 77.3
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 1.6e-08 62.4 43 79.1
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 1.6e-08 62.4 43 79.1
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 1.6e-08 62.4 43 79.1
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 1.6e-08 62.4 43 79.1
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 2.1e-08 62.0 42 73.8
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 2.1e-08 62.0 42 73.8
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 2.1e-08 62.0 51 68.6
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 3.5e-08 61.2 42 71.4
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 6.0e-08 60.5 42 71.4
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 6.0e-08 60.5 47 72.3
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 6.0e-08 60.5 37 89.2
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 6.0e-08 60.5 46 76.1
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 7.9e-08 60.1 48 66.7
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 1.0e-07 59.7 53 64.2
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 1.3e-07 59.3 41 70.7
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.8e-07 58.9 42 73.8
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 2.3e-07 58.5 49 67.3
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 3.9e-07 57.8 37 83.8
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 5.1e-07 57.4 45 66.7
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 6.7e-07 57.0 41 73.2
TPR.G29629 Trifolium pratense HOM05D007503 ORTHO05D009487 6.7e-07 57.0 40 77.5
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 8.7e-07 56.6 50 62.0
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.1e-06 56.2 37 81.1
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 1.1e-06 56.2 49 63.3
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 1.9e-06 55.5 40 72.5
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 1.9e-06 55.5 37 81.1
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 2.5e-06 55.1 48 66.7
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 2.5e-06 55.1 47 59.6
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 2.5e-06 55.1 45 62.2
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 2.5e-06 55.1 40 67.5
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 3.3e-06 54.7 40 70.0
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 3.3e-06 54.7 37 78.4
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 4.3e-06 54.3 50 60.0
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 4.3e-06 54.3 40 70.0
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 4.3e-06 54.3 40 72.5
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 4.3e-06 54.3 49 61.2
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 5.6e-06 53.9 40 70.0
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 5.6e-06 53.9 37 78.4
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 7.4e-06 53.5 50 58.0
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 7.4e-06 53.5 50 58.0
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 7.4e-06 53.5 50 62.0
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 7.4e-06 53.5 48 64.6
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 7.4e-06 53.5 48 64.6
PGSC0003DMG400000976 Solanum tuberosum HOM05D007503 ORTHO05D009487 7.4e-06 53.5 48 64.6
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 9.6e-06 53.1 50 60.0
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 9.6e-06 53.1 50 60.0
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 9.6e-06 53.1 50 60.0
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 9.6e-06 53.1 50 60.0
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 9.6e-06 53.1 44 65.9


User provided reference genes

Program Settings