Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 2.0e-98 362.5 184 100.0
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 1.3e-20 104.0 69 84.1
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 1.4e-19 100.5 69 78.3
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 1.4e-19 100.5 67 79.1
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 2.6e-18 96.3 63 76.2
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 2.6e-18 96.3 63 76.2
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 3.4e-18 95.9 63 73.0
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 7.7e-18 94.7 61 78.7
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 7.7e-18 94.7 63 73.0
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 1.3e-17 94.0 65 75.4
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 1.7e-17 93.6 91 62.6
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 2.2e-17 93.2 66 72.7
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 2.9e-17 92.8 82 59.8
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 2.9e-17 92.8 65 75.4
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 2.9e-17 92.8 68 70.6
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 2.9e-17 92.8 68 70.6
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 5.0e-17 92.0 76 65.8
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 1.1e-16 90.9 63 73.0
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 1.4e-16 90.5 63 69.8
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 1.9e-16 90.1 66 71.2
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 4.2e-16 89.0 63 66.7
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 4.2e-16 89.0 87 59.8
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 4.2e-16 89.0 88 58.0
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 4.2e-16 89.0 63 69.8
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 5.5e-16 88.6 65 66.2
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 7.2e-16 88.2 75 65.3
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 7.2e-16 88.2 64 64.1
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 9.4e-16 87.8 63 69.8
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 9.4e-16 87.8 64 70.3
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 1.6e-15 87.0 63 68.3
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 1.6e-15 87.0 63 66.7
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 1.6e-15 87.0 63 66.7
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 2.1e-15 86.7 77 58.4
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 2.1e-15 86.7 63 66.7
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 2.1e-15 86.7 63 66.7
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 4.7e-15 85.5 62 69.4
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 6.1e-15 85.1 63 69.8
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 7.9e-15 84.7 91 57.1
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 7.9e-15 84.7 63 65.1
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 1.0e-14 84.3 63 63.5
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 1.4e-14 84.0 63 66.7
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 1.8e-14 83.6 63 61.9
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 2.3e-14 83.2 63 65.1
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 3.0e-14 82.8 63 66.7
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 3.0e-14 82.8 66 62.1
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 3.9e-14 82.4 83 56.6
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 3.9e-14 82.4 63 61.9
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 6.7e-14 81.6 77 54.5
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 8.8e-14 81.3 66 57.6
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 8.8e-14 81.3 76 56.6
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 8.8e-14 81.3 63 60.3
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 1.1e-13 80.9 63 60.3
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 1.1e-13 80.9 51 82.4
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 1.5e-13 80.5 91 56.0
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 1.5e-13 80.5 64 60.9
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 2.0e-13 80.1 76 55.3
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 2.0e-13 80.1 63 63.5
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 3.3e-13 79.3 63 63.5
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 4.4e-13 79.0 76 56.6
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 5.7e-13 78.6 86 52.3
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 7.4e-13 78.2 77 54.5
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 7.4e-13 78.2 63 60.3
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 7.4e-13 78.2 54 70.4
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 1.3e-12 77.4 76 53.9
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 1.3e-12 77.4 63 66.7
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 1.7e-12 77.0 63 61.9
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 2.2e-12 76.6 93 49.5
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 2.8e-12 76.3 65 56.9
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 6.3e-12 75.1 92 47.8
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 8.2e-12 74.7 75 53.3
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 8.2e-12 74.7 81 51.9
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 1.1e-11 74.3 103 45.6
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 1.1e-11 74.3 59 59.3
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 1.4e-11 73.9 81 51.9
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 2.4e-11 73.2 63 60.3
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 4.1e-11 72.4 91 46.2
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 4.1e-11 72.4 91 46.2
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 1.2e-10 70.9 82 46.3
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 1.2e-10 70.9 62 54.8
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 2.0e-10 70.1 63 60.3
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 3.5e-10 69.3 64 51.6
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 3.5e-10 69.3 92 50.0
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 5.9e-10 68.6 83 45.8
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 1.3e-09 67.4 86 46.5
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 3.8e-09 65.9 58 58.6
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 5.0e-09 65.5 60 56.7
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 3.2e-08 62.8 53 58.5
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 4.7e-07 58.9 55 52.7
Actinidia14648 Actinidia chinensis HOM05D007649 ORTHO05D009668 6.7e-06 55.1 33 84.8


User provided reference genes

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