Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 8.0e-107 390.6 218 100.0
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 8.6e-101 370.5 218 95.9
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 1.9e-71 273.1 192 72.4
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 1.2e-70 270.4 192 71.4
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 5.8e-65 251.5 193 64.2
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 4.9e-64 248.4 184 67.9
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 3.2e-63 245.7 192 63.0
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 2.7e-62 242.7 187 66.3
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 1.0e-61 240.7 194 64.9
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 1.0e-61 240.7 185 65.4
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 3.0e-61 239.2 188 62.8
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 5.1e-61 238.4 187 64.7
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 6.7e-61 238.0 196 63.8
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 8.7e-61 237.7 188 62.2
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.1e-60 237.3 188 62.2
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 1.9e-60 236.5 196 61.7
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 2.5e-60 236.1 196 58.7
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 5.6e-60 235.0 194 59.8
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 9.6e-60 234.2 198 61.6
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 2.1e-59 233.0 187 64.7
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 2.1e-59 233.0 188 63.3
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 2.8e-59 232.6 200 62.0
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.8e-59 232.6 191 61.3
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 4.0e-58 228.8 196 60.2
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 6.9e-58 228.0 194 57.7
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 9.0e-58 227.6 191 60.2
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 1.2e-57 227.3 187 61.5
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 1.5e-57 226.9 187 61.0
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 5.8e-57 224.9 198 59.6
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 5.8e-57 224.9 195 57.4
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 7.6e-57 224.6 192 56.8
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 3.8e-56 222.2 187 62.6
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 3.8e-56 222.2 194 61.3
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 4.9e-56 221.9 183 63.4
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 8.4e-56 221.1 193 57.5
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 1.1e-55 220.7 196 57.1
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 3.2e-55 219.2 195 57.4
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 3.2e-55 219.2 183 58.5
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 4.2e-55 218.8 190 61.6
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 1.2e-54 217.2 196 58.2
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 1.2e-54 217.2 186 59.1
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 1.6e-54 216.9 184 60.3
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 1.8e-53 213.4 196 56.1
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 3.0e-53 212.6 193 58.0
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 2.5e-52 209.5 201 55.7
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 3.3e-52 209.1 175 56.6
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 1.6e-51 206.8 172 62.2
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 2.1e-51 206.5 184 57.1
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 2.8e-51 206.1 190 57.4
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 6.2e-51 204.9 184 56.5
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 2.4e-50 203.0 196 55.6
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 6.9e-50 201.4 187 51.9
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 6.9e-50 201.4 193 55.4
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 9.0e-50 201.1 186 54.8
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 1.2e-49 200.7 199 57.3
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 1.5e-49 200.3 194 54.6
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 2.0e-49 199.9 185 51.4
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 5.8e-49 198.4 187 57.8
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 1.7e-48 196.8 199 56.3
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 2.2e-48 196.4 182 55.5
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 2.9e-48 196.1 188 55.3
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 8.4e-48 194.5 199 55.3
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 8.4e-48 194.5 192 55.7
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.1e-47 194.1 195 56.9
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 1.1e-47 194.1 188 54.8
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 1.4e-47 193.7 182 56.0
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 1.9e-47 193.4 197 53.8
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 2.5e-47 193.0 196 53.6
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 3.2e-47 192.6 188 54.3
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 5.5e-47 191.8 199 54.3
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 1.2e-46 190.7 191 51.8
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 1.6e-46 190.3 183 55.2
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 1.0e-45 187.6 188 55.9
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 5.1e-45 185.3 198 52.5
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 5.1e-45 185.3 198 52.5
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 1.9e-44 183.3 194 52.1
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 1.9e-44 183.3 198 51.0
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 3.3e-44 182.6 168 58.3
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 5.7e-44 181.8 186 53.2
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 2.8e-43 179.5 186 52.7
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 3.7e-43 179.1 186 53.2
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 3.7e-43 179.1 201 50.7
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 8.2e-43 177.9 186 52.7
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 1.1e-42 177.6 186 52.2
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 1.1e-42 177.6 186 52.2
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 1.1e-42 177.6 186 52.2
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 1.4e-42 177.2 186 52.2
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 1.4e-42 177.2 186 52.2
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.8e-42 176.8 175 57.7
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 3.1e-42 176.0 175 57.7
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 5.3e-42 175.3 157 64.3
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 5.3e-42 175.3 179 53.6
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 6.9e-42 174.9 267 41.9
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 6.9e-42 174.9 184 47.8
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 6.9e-42 174.9 186 52.2
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 9.0e-42 174.5 186 51.6
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 9.0e-42 174.5 198 51.0
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 5.5e-39 165.2 208 47.6
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 2.2e-35 153.3 136 58.1
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 1.1e-34 151.0 183 45.9
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 6.9e-34 148.3 191 41.4
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 2.6e-33 146.4 122 54.9
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 3.2e-31 139.4 118 61.0
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 8.8e-29 131.3 106 59.4
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 2.2e-27 126.7 108 63.0
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 2.6e-25 119.8 181 39.8
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 5.9e-25 118.6 170 38.8
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 5.9e-25 118.6 184 40.2
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 2.2e-24 116.7 198 38.4
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 1.9e-23 113.6 83 68.7
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 1.2e-22 110.9 88 60.2
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 1.2e-22 110.9 181 38.7
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 6.7e-21 105.1 127 47.2
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 4.8e-19 99.0 127 45.7
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 1.7e-11 73.9 51 68.6
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.7e-11 73.9 89 46.1
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 1.7e-11 73.9 66 59.1
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 3.7e-11 72.8 59 64.4
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 3.1e-10 69.7 49 65.3


User provided reference genes

Program Settings