Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 6.1e-258 893.6 459 100.0
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.1e-213 745.7 453 83.7
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 8.7e-212 740.3 426 88.0
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 6.4e-207 724.2 443 82.8
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.2e-205 719.9 443 81.3
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 1.5e-203 713.0 442 80.5
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 4.5e-200 701.4 444 79.3
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 4.5e-200 701.4 443 79.7
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 1.2e-197 693.3 443 78.8
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.0e-196 690.3 455 77.6
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 3.0e-196 688.7 443 78.8
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 3.1e-193 678.7 445 77.5
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 7.6e-192 674.1 451 75.2
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 6.5e-191 671.0 517 67.9
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 2.1e-189 666.0 443 75.8
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 3.6e-189 665.2 443 74.7
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 1.3e-188 663.3 451 73.6
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 2.3e-188 662.5 456 71.9
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 3.9e-188 661.8 443 74.0
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 3.9e-188 661.8 446 74.7
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 4.3e-187 658.3 444 76.8
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 1.3e-186 656.8 444 73.2
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.8e-186 655.6 451 73.2
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 6.3e-186 654.4 444 75.7
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.1e-185 653.7 446 73.5
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 1.1e-185 653.7 444 74.8
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 1.4e-185 653.3 443 72.9
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 1.8e-185 652.9 444 73.6
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 2.4e-185 652.5 444 73.6
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 4.1e-185 651.7 443 73.8
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 1.2e-184 650.2 443 72.2
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 1.5e-184 649.8 443 72.5
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 2.0e-184 649.4 444 73.9
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 7.7e-184 647.5 443 73.6
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 2.2e-183 646.0 444 71.6
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 2.2e-183 646.0 443 70.9
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.5e-182 641.3 453 72.0
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 1.6e-181 639.8 443 72.0
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 4.6e-181 638.3 444 71.8
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 4.6e-181 638.3 443 72.7
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 6.1e-181 637.9 443 72.7
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 6.1e-181 637.9 443 70.7
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.0e-180 637.1 426 77.5
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 3.9e-180 635.2 444 72.3
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 2.0e-179 632.9 447 71.4
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 4.4e-179 631.7 441 71.0
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 2.2e-178 629.4 448 70.5
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 2.8e-178 629.0 443 70.0
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 4.8e-178 628.2 448 70.5
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 6.3e-178 627.9 449 71.0
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 6.9e-177 624.4 438 74.7
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 1.5e-176 623.2 444 70.0
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 3.4e-176 622.1 454 72.0
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 4.5e-176 621.7 441 69.8
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 1.0e-175 620.5 444 69.8
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 1.7e-175 619.8 444 69.4
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.7e-175 619.8 444 69.4
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 3.8e-175 618.6 440 69.8
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 3.8e-175 618.6 440 70.0
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 6.5e-175 617.8 444 69.8
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 1.1e-171 607.1 412 73.5
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.3e-170 603.6 459 68.2
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 2.0e-168 596.3 422 71.1
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 3.5e-168 595.5 423 70.2
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 8.5e-167 590.9 457 66.5
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 3.6e-165 585.5 412 72.6
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.0e-164 583.9 457 65.9
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.4e-164 583.6 431 69.4
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.4e-163 578.6 472 64.2
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 4.4e-163 578.6 401 73.6
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 1.1e-161 573.9 443 67.0
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 3.1e-161 572.4 440 66.1
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 5.9e-160 568.2 420 72.4
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 5.0e-159 565.1 371 78.7
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 1.2e-157 560.5 423 70.2
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 2.1e-157 559.7 432 67.8
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.8e-156 554.7 459 63.2
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 6.3e-154 548.1 386 73.3
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 8.3e-154 547.7 422 69.2
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.4e-153 547.0 457 62.8
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 3.1e-153 545.8 475 60.0
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 4.1e-153 545.4 410 69.0
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 9.1e-153 544.3 451 62.3
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 8.5e-151 537.7 350 77.7
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.9e-150 536.6 368 74.7
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 8.0e-149 531.2 449 60.4
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 1.4e-148 530.4 508 57.9
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 1.8e-148 530.0 449 62.4
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.3e-146 523.9 426 62.4
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 2.8e-146 522.7 427 63.9
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 6.3e-146 521.5 426 66.7
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.3e-143 513.8 495 57.2
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 3.0e-140 502.7 380 69.2
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 5.2e-140 501.9 455 58.9
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 2.6e-139 499.6 459 59.0
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 2.6e-139 499.6 443 59.1
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.4e-137 493.8 359 72.4
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 9.2e-137 491.1 438 59.4
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 2.0e-136 490.0 333 73.9
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 4.6e-136 488.8 458 57.9
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.3e-127 459.9 392 64.3
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 4.0e-124 449.1 349 69.6
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 8.9e-124 448.0 300 75.0
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 3.2e-121 439.5 298 74.5
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 7.1e-105 385.2 443 46.5
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 6.0e-104 382.1 452 46.5
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.8e-101 373.2 212 87.7
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.6e-99 366.7 444 46.8
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.4e-99 366.3 230 81.3
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.8e-99 365.5 288 67.4
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.4e-89 334.3 428 43.0
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 2.4e-89 333.6 228 72.4
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.8e-84 317.4 383 49.9
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 7.6e-83 312.0 214 72.4
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.3e-79 301.2 462 42.4
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 1.5e-78 297.7 218 68.8
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 8.2e-77 292.0 191 74.3
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 3.6e-72 276.6 430 41.2
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 1.0e-71 275.0 409 41.3
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 4.1e-68 263.1 193 71.5
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.2e-67 261.5 217 65.4
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 6.5e-58 229.2 162 67.3
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.4e-52 211.5 198 56.6
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 4.1e-44 183.3 549 29.1
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 3.5e-43 180.3 150 59.3
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 1.5e-41 174.9 162 59.9
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 9.8e-38 162.2 97 85.6
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.0e-34 152.1 97 72.2
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 1.3e-34 151.8 393 30.0
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.6e-32 144.8 153 50.3
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.6e-32 144.8 153 50.3
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 4.7e-32 143.3 78 85.9
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 3.0e-31 140.6 97 70.1
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 9.8e-30 135.6 111 64.0
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 1.3e-26 125.2 100 63.0
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 5.2e-23 113.2 98 64.3
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.2e-22 112.1 54 98.1
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 6.4e-21 106.3 377 29.2
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.4e-20 104.4 54 94.4
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.1e-20 103.6 236 36.9
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.7e-19 100.9 90 50.0
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.6e-19 100.1 62 83.9
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.6e-19 100.1 62 83.9
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.9e-17 94.7 66 71.2
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 1.1e-15 89.0 135 44.4
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 4.0e-15 87.0 55 85.5
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 4.0e-15 87.0 55 76.4
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 4.9e-13 80.1 80 56.2
GSVIVG01037115001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.5e-09 68.6 56 55.4
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.8e-07 61.6 48 52.1


User provided reference genes

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