Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.9e-150 535.8 274 100.0
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 4.0e-103 378.6 272 70.6
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.5e-102 376.7 265 73.6
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.5e-102 376.7 263 74.1
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 3.6e-96 355.5 274 66.4
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.8e-95 353.2 274 67.5
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.7e-94 348.2 274 66.8
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 7.5e-94 347.8 256 69.9
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 9.8e-94 347.4 271 66.1
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.4e-92 343.6 271 67.2
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 9.2e-92 340.9 273 65.6
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 2.0e-91 339.7 277 63.2
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 2.7e-91 339.3 271 62.0
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.7e-91 339.3 273 61.2
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 3.5e-91 339.0 271 66.1
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.0e-90 337.4 273 60.8
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.0e-90 337.4 274 64.2
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.8e-90 335.5 274 63.5
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 6.6e-90 334.7 271 63.5
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.3e-89 332.4 273 60.1
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.3e-89 332.0 274 64.2
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.8e-88 329.3 274 63.5
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 3.6e-88 328.9 271 62.7
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.4e-87 327.0 274 63.1
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 4.0e-87 325.5 273 61.5
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.9e-87 324.3 274 62.4
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.0e-86 323.2 274 62.4
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 3.4e-86 322.4 271 63.8
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 2.2e-85 319.7 271 60.5
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 4.9e-85 318.5 273 61.5
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 6.4e-85 318.2 251 65.7
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 6.4e-85 318.2 272 62.5
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.4e-84 317.0 274 61.7
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.4e-84 317.0 272 62.1
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 2.4e-84 316.2 272 61.8
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 3.2e-84 315.8 272 61.4
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 3.2e-84 315.8 360 51.9
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 5.4e-84 315.1 272 61.0
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 9.2e-84 314.3 274 58.8
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.6e-83 313.5 273 61.2
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 2.7e-83 312.8 269 63.6
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 2.7e-83 312.8 251 65.3
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 3.9e-82 308.9 271 57.9
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 6.6e-82 308.1 281 59.1
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 6.6e-82 308.1 274 60.2
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 5.6e-81 305.1 269 60.6
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 9.5e-81 304.3 272 58.1
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.2e-80 303.9 274 56.2
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.6e-80 303.5 274 58.4
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 4.7e-80 302.0 275 59.3
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.1e-79 300.8 264 56.1
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.4e-79 300.4 255 62.7
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.8e-79 300.1 267 58.1
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 4.0e-79 298.9 255 62.4
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 4.0e-79 298.9 271 57.6
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 5.2e-79 298.5 323 53.9
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 1.2e-78 297.4 271 56.8
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.5e-78 297.0 248 59.7
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.7e-77 293.5 245 60.4
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 2.2e-77 293.1 274 58.0
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 2.9e-77 292.7 271 55.0
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 2.9e-77 292.7 271 56.8
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 3.7e-77 292.4 268 57.1
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 3.2e-76 289.3 244 60.2
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 7.0e-76 288.1 275 55.6
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 7.0e-76 288.1 270 54.1
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 9.2e-76 287.7 271 54.6
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.6e-75 287.0 272 55.5
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 2.0e-75 286.6 269 59.1
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 3.5e-75 285.8 268 54.5
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-74 283.9 272 54.8
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.3e-74 283.9 266 56.0
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.3e-74 283.9 272 54.8
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.3e-74 283.9 272 54.8
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.3e-74 283.9 266 56.0
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.3e-74 283.9 261 56.7
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 2.3e-74 283.1 266 55.3
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 3.0e-74 282.7 275 54.9
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-73 280.8 266 55.3
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.1e-73 280.8 266 55.3
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 2.5e-73 279.6 273 54.6
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 2.5e-73 279.6 272 54.0
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 2.5e-73 279.6 272 52.6
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 3.3e-73 279.3 266 55.6
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 4.3e-73 278.9 273 54.2
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 5.6e-73 278.5 270 54.1
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 5.6e-73 278.5 270 54.1
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 5.6e-73 278.5 292 56.5
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 7.3e-73 278.1 275 53.8
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 9.5e-73 277.7 270 53.3
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.2e-72 277.3 272 53.7
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 2.1e-72 276.6 273 53.8
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 2.1e-72 276.6 272 52.6
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 2.1e-72 276.6 271 53.1
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 2.1e-72 276.6 267 53.9
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.8e-72 276.2 272 52.9
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 2.8e-72 276.2 273 53.5
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 2.8e-72 276.2 273 53.5
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 2.8e-72 276.2 273 53.5
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 4.7e-72 275.4 273 54.6
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 4.7e-72 275.4 265 53.6
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.1e-72 274.6 268 53.0
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 8.1e-72 274.6 272 51.8
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.8e-71 273.5 270 53.3
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 1.8e-71 273.5 267 53.2
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 3.1e-71 272.7 272 52.6
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 3.1e-71 272.7 248 58.9
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.0e-71 272.3 272 52.6
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 4.0e-71 272.3 272 52.9
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 5.2e-71 271.9 267 54.3
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.8e-71 271.6 260 58.1
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.4e-70 269.2 273 53.5
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 7.5e-70 268.1 272 49.6
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.7e-69 266.9 272 51.8
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.2e-69 266.5 271 51.7
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.9e-69 266.2 269 51.7
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 2.9e-69 266.2 274 52.6
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.1e-68 264.2 252 52.0
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.9e-68 263.5 268 51.9
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.9e-68 263.5 350 47.1
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.4e-68 263.1 272 51.5
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 3.2e-68 262.7 271 50.2
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 5.4e-68 261.9 268 52.6
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 5.4e-68 261.9 274 51.8
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 4.6e-67 258.8 272 52.2
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 8.6e-66 254.6 272 52.2
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.1e-65 254.2 272 52.2
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 4.4e-62 242.3 275 47.3
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 2.4e-60 236.5 267 46.8
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 9.2e-60 234.6 276 48.2
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.0e-58 231.1 271 45.0
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 1.1e-57 227.6 221 56.1
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 7.3e-57 224.9 265 46.0
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 7.3e-57 224.9 265 46.0
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 2.3e-50 203.4 274 43.8
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 8.7e-50 201.4 213 50.7
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 4.2e-44 182.6 164 58.5
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 7.9e-43 178.3 245 36.7
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 3.9e-42 176.0 170 57.1
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.7e-40 169.5 208 48.6
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 3.8e-37 159.5 121 67.8
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.7e-32 142.9 193 44.0
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.0e-26 124.8 136 47.8
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 1.0e-26 124.8 274 32.5
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.0e-26 123.2 136 47.1
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.3e-25 119.8 268 27.6
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.7e-25 119.0 116 54.3
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 6.9e-23 112.1 274 28.8
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 3.8e-21 106.3 268 31.0
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.2e-20 102.8 89 56.2
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 6.5e-13 79.0 83 48.2
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 2.5e-12 77.0 69 52.2
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 2.5e-12 77.0 69 52.2
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 2.5e-12 77.0 69 52.2
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 4.2e-12 76.3 66 53.0
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.4e-12 75.1 49 71.4
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.4e-12 75.1 49 71.4
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.4e-12 75.1 49 71.4
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 9.4e-12 75.1 98 37.8
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 7.9e-11 72.0 69 49.3
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 1.7e-08 64.3 68 47.1
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 9.1e-07 58.5 96 40.6
Glyma.03G121400 Glycine max HOM05D004300 ORTHO05D005171 5.9e-06 55.8 40 60.0


User provided reference genes

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