Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 5.8e-208 727.2 352 100.0
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 5.9e-152 541.2 358 75.7
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 1.2e-141 506.9 333 76.3
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 4.9e-138 495.0 338 74.3
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 3.9e-135 485.3 352 66.2
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 3.0e-127 459.1 358 64.0
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 1.2e-120 437.2 359 61.8
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 2.3e-119 433.0 355 61.7
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 1.1e-118 430.6 325 63.7
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 4.3e-118 428.7 355 62.3
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 3.6e-117 425.6 355 59.7
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 5.2e-116 421.8 345 60.6
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 8.9e-116 421.0 297 68.7
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 7.6e-115 417.9 354 59.6
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 7.6e-115 417.9 307 63.8
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 2.9e-114 416.0 308 63.0
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 4.9e-114 415.2 360 58.3
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 2.4e-113 412.9 330 60.9
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 3.9e-111 405.6 334 57.8
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 5.1e-111 405.2 311 62.1
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 6.6e-111 404.8 332 59.9
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 8.7e-111 404.4 346 58.7
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 1.1e-110 404.1 304 61.8
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 1.5e-110 403.7 299 63.2
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 3.3e-110 402.5 308 63.0
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 9.6e-110 401.0 341 57.8
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 2.1e-109 399.8 316 63.3
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 4.8e-109 398.7 315 60.6
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 1.4e-108 397.1 360 57.2
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 3.1e-108 396.0 346 57.2
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 2.0e-107 393.3 315 60.3
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 7.6e-107 391.3 303 59.4
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 7.6e-107 391.3 332 56.9
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 1.7e-106 390.2 338 56.5
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 1.7e-106 390.2 354 56.2
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 2.2e-106 389.8 350 53.7
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 2.2e-106 389.8 317 56.2
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 4.9e-106 388.7 305 60.3
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 4.9e-106 388.7 361 54.3
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 6.4e-106 388.3 306 62.1
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 1.4e-105 387.1 296 61.5
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 1.9e-105 386.7 354 55.4
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 1.9e-105 386.7 309 59.2
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 5.4e-105 385.2 311 58.5
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 7.1e-105 384.8 354 54.0
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 7.1e-105 384.8 305 58.7
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 1.6e-104 383.6 246 73.6
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 1.6e-104 383.6 307 59.0
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 3.5e-104 382.5 324 59.0
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 4.6e-104 382.1 355 54.4
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 1.0e-103 380.9 275 66.9
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 1.0e-103 380.9 347 55.6
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 1.7e-103 380.2 350 53.7
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 2.3e-103 379.8 298 61.4
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 2.3e-103 379.8 306 60.1
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 3.0e-103 379.4 304 59.9
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 3.9e-103 379.0 361 54.0
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 5.1e-103 378.6 337 54.3
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 6.6e-103 378.3 299 58.9
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 1.1e-102 377.5 355 53.5
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 1.5e-102 377.1 351 55.6
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 1.9e-102 376.7 299 59.2
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 3.3e-102 375.9 306 59.8
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 3.3e-102 375.9 354 55.1
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 5.6e-102 375.2 354 54.2
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 1.3e-101 374.0 345 53.9
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 1.1e-100 370.9 367 51.2
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 2.4e-100 369.8 335 56.1
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 5.3e-100 368.6 306 56.9
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 2.0e-99 366.7 300 58.0
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 3.8e-98 362.5 287 59.6
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 4.9e-98 362.1 278 63.3
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.1e-97 360.9 320 56.2
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 1.9e-97 360.1 319 54.5
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 1.2e-96 357.5 264 61.4
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 7.9e-96 354.8 306 57.2
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 8.7e-95 351.3 275 60.4
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 1.5e-94 350.5 319 53.9
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 3.3e-94 349.4 331 52.6
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 1.6e-93 347.1 304 57.6
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 2.1e-93 346.7 319 55.5
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 2.8e-93 346.3 283 59.0
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 3.1e-92 342.8 307 56.4
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 4.0e-92 342.4 303 54.5
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 5.3e-92 342.0 308 53.2
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 9.0e-92 341.3 312 54.8
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 3.8e-90 335.9 248 62.5
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 7.1e-89 331.6 311 53.7
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 5.3e-84 315.5 278 56.1
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.2e-83 314.3 278 55.8
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 4.5e-83 312.4 241 61.0
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 7.9e-80 301.6 315 49.5
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 1.9e-78 297.0 382 43.5
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 2.2e-77 293.5 297 49.5
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 4.1e-76 289.3 310 48.7
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 2.5e-73 280.0 190 68.4
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 2.7e-72 276.6 217 63.6
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 8.8e-71 271.6 307 47.9
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 5.7e-62 242.3 328 42.4
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 1.7e-58 230.7 279 45.2
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 2.5e-57 226.9 308 43.5
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 6.7e-55 218.8 189 60.3
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 1.1e-54 218.0 298 41.9
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 1.7e-53 214.2 326 36.2
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 4.4e-46 189.5 171 56.1
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 1.0e-42 178.3 398 33.4
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 2.9e-42 176.8 358 33.8
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 4.1e-28 129.8 108 56.5
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 1.2e-27 128.3 105 63.8
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 1.9e-25 120.9 222 36.9
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 5.6e-25 119.4 130 46.2
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 1.2e-24 118.2 263 32.3
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 3.6e-24 116.7 109 50.5
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 7.0e-20 102.4 126 46.0
CSS0014268 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 6.6e-10 69.3 106 41.5
COL.COLO4_19820 Corchorus olitorius HOM05D001041 ORTHO05D000846 2.3e-07 60.8 50 64.0


User provided reference genes

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