Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042314 Camellia sinensis var. sinensis HOM05D000926 ORTHO05D000707 1.0e-45 186.4 95 100.0
CSS0047994 Camellia sinensis var. sinensis HOM05D000926 ORTHO05D000707 8.8e-42 173.3 96 95.8
Thecc.04G113000 Theobroma cacao HOM05D000926 ORTHO05D000707 2.5e-12 75.5 81 50.6
Potri.004G108680 Populus trichocarpa HOM05D000926 ORTHO05D000707 3.2e-12 75.1 81 50.6
Potri.017G107300 Populus trichocarpa HOM05D000926 ORTHO05D000707 5.5e-12 74.3 81 51.9
Sabra17G0090100 Salix brachista HOM05D000926 ORTHO05D000707 9.5e-12 73.6 81 53.1
Duzib211G0100 Durio zibethinus HOM05D000926 ORTHO05D000707 2.1e-11 72.4 93 47.3
Gohir.D07G185000 Gossypium hirsutum HOM05D000926 ORTHO05D000707 2.1e-11 72.4 93 44.1
Gorai.001G205500 Gossypium raimondii HOM05D000926 ORTHO05D000707 2.1e-11 72.4 93 44.1
Potri.017G107200 Populus trichocarpa HOM05D000926 ORTHO05D000707 4.7e-11 71.2 81 49.4
CiPaw.03G080100 Carya illinoinensis HOM05D000926 ORTHO05D000707 6.1e-11 70.9 95 45.3
Manes.02G062600 Manihot esculenta HOM05D000926 ORTHO05D000707 8.0e-11 70.5 83 45.8
Dinv34883 Davidia involucrata HOM05D000926 ORTHO05D000707 1.0e-10 70.1 90 43.3
TAR374G1048 Trochodendron aralioides HOM05D000926 ORTHO05D000707 2.3e-10 68.9 81 49.4
GSVIVG01036505001 Vitis vinifera HOM05D000926 ORTHO05D000707 3.0e-10 68.6 91 44.0
Manes.02G062400 Manihot esculenta HOM05D000926 ORTHO05D000707 4.0e-10 68.2 96 44.8
Duzib138G1671 Durio zibethinus HOM05D000926 ORTHO05D000707 5.2e-10 67.8 91 39.6
Gohir.A07G178200 Gossypium hirsutum HOM05D000926 ORTHO05D000707 5.2e-10 67.8 94 41.5
Sabra04G0073900 Salix brachista HOM05D000926 ORTHO05D000707 6.8e-10 67.4 81 46.9
AUR62023120 Chenopodium quinoa HOM05D000926 ORTHO05D000707 1.2e-09 66.6 94 37.2
Manes.01G106100 Manihot esculenta HOM05D000926 ORTHO05D000707 2.6e-09 65.5 82 47.6
TPR.G3253 Trifolium pratense HOM05D000926 ORTHO05D000707 3.4e-09 65.1 87 39.1
Hma1.2p1_0588F.1_g184540 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 4.4e-09 64.7 82 45.1
THA.LOC109116337 Tarenaya hassleriana HOM05D000926 ORTHO05D000707 4.4e-09 64.7 82 41.5
Lalb_Chr10g0092481 Lupinus albus HOM05D000926 ORTHO05D000707 5.7e-09 64.3 82 37.8
Medtr3g105690 Medicago truncatula HOM05D000926 ORTHO05D000707 5.7e-09 64.3 105 36.2
EL10Ac2g04400 Beta vulgaris HOM05D000926 ORTHO05D000707 7.5e-09 63.9 83 43.4
Cfa007729 Carpinus fangiana HOM05D000926 ORTHO05D000707 1.3e-08 63.2 93 41.9
Ciclev10013138m.g Citrus clementina HOM05D000926 ORTHO05D000707 1.3e-08 63.2 92 38.0
Manes.05G115600 Manihot esculenta HOM05D000926 ORTHO05D000707 1.3e-08 63.2 80 47.5
Nn8g40369 Nelumbo nucifera HOM05D000926 ORTHO05D000707 1.3e-08 63.2 85 44.7
ECA232G3566 Erigeron canadensis HOM05D000926 ORTHO05D000707 1.7e-08 62.8 97 43.3
Glyma.08G254800 Glycine max HOM05D000926 ORTHO05D000707 1.7e-08 62.8 83 41.0
Phvul.008G023400 Phaseolus vulgaris HOM05D000926 ORTHO05D000707 1.7e-08 62.8 82 45.1
Potri.017G107400 Populus trichocarpa HOM05D000926 ORTHO05D000707 1.7e-08 62.8 92 44.6
AUR62009442 Chenopodium quinoa HOM05D000926 ORTHO05D000368 2.2e-08 62.4 93 36.6
Potri.004G108440 Populus trichocarpa HOM05D000926 ORTHO05D000707 2.2e-08 62.4 93 46.2
QL02p063891 Quercus lobata HOM05D000926 ORTHO05D000707 2.2e-08 62.4 91 42.9
Cfa007731 Carpinus fangiana HOM05D000926 ORTHO05D000707 3.7e-08 61.6 93 39.8
PGR044G0045 Punica granatum HOM05D000926 ORTHO05D000707 3.7e-08 61.6 83 47.0
PGSC0003DMG400001479 Solanum tuberosum HOM05D000926 ORTHO05D000707 3.7e-08 61.6 97 41.2
PGSC0003DMG400029541 Solanum tuberosum HOM05D000926 ORTHO05D000707 3.7e-08 61.6 97 41.2
Thecc.04G112900 Theobroma cacao HOM05D000926 ORTHO05D000707 4.9e-08 61.2 90 38.9
Glyma.18G277600 Glycine max HOM05D000926 ORTHO05D000707 6.3e-08 60.8 85 38.8
Rhsim08G0078900 Rhododendron simsii HOM05D000926 ORTHO05D000707 6.3e-08 60.8 80 43.8
Sopen02g034220 Solanum pennellii HOM05D000926 ORTHO05D000707 6.3e-08 60.8 97 41.2
MBI15_g03197_MAGBIO Magnolia biondii HOM05D000926 ORTHO05D000707 8.3e-08 60.5 93 41.9
Manes.01G105900 Manihot esculenta HOM05D000926 ORTHO05D000707 8.3e-08 60.5 96 43.8
Medtr0542s0020 Medicago truncatula HOM05D000926 ORTHO05D000707 8.3e-08 60.5 82 39.0
Oeu032515.1 Olea europaea HOM05D000926 ORTHO05D000707 8.3e-08 60.5 89 42.7
VMungo1309G0762 Vigna mungo HOM05D000926 ORTHO05D000707 8.3e-08 60.5 102 41.2
Ah.09g229670 Amaranthus hybridus HOM05D000926 ORTHO05D000707 1.1e-07 60.1 87 43.7
ATR0691G108 Amborella trichopoda HOM05D000926 ORTHO05D000707 1.1e-07 60.1 80 41.2
Aqoxy3G00596 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 1.1e-07 60.1 81 43.2
Cfa007730 Carpinus fangiana HOM05D000926 ORTHO05D000707 1.1e-07 60.1 81 45.7
Potri.017G107100 Populus trichocarpa HOM05D000926 ORTHO05D000707 1.1e-07 60.1 82 42.7
TAR629G1973 Trochodendron aralioides HOM05D000926 ORTHO05D000707 1.1e-07 60.1 81 45.7
Nn2g12621 Nelumbo nucifera HOM05D000926 ORTHO05D000707 1.4e-07 59.7 85 42.4
PSO063G3264 Papaver somniferum HOM05D000926 ORTHO05D000707 1.4e-07 59.7 90 43.3
PSO782G3113 Papaver somniferum HOM05D000926 ORTHO05D000707 1.4e-07 59.7 90 43.3
TPR.G38905 Trifolium pratense HOM05D000926 ORTHO05D000707 1.4e-07 59.7 86 36.0
Haze_14349 Corylus avellana HOM05D000926 ORTHO05D000707 1.8e-07 59.3 81 43.2
Duzib084G1204 Durio zibethinus HOM05D000926 ORTHO05D000707 1.8e-07 59.3 80 42.5
Migut.H00567 Erythranthe guttata HOM05D000926 ORTHO05D000707 1.8e-07 59.3 93 35.5
PSO478G4837 Papaver somniferum HOM05D000926 ORTHO05D000707 1.8e-07 59.3 93 43.0
Peaxi162Scf00479g00093 Petunia axillaris HOM05D000926 ORTHO05D000707 1.8e-07 59.3 100 41.0
Solyc02g089480.1 Solanum lycopersicum HOM05D000926 ORTHO05D000707 1.8e-07 59.3 97 41.2
Cpa.g.sc23.52 Carica papaya HOM05D000926 ORTHO05D000707 2.4e-07 58.9 87 41.4
Lj7C741T14 Lonicera japonica HOM05D000926 ORTHO05D000707 2.4e-07 58.9 86 41.9
Lj1g0017144 Lotus japonicus HOM05D000926 ORTHO05D000707 2.4e-07 58.9 84 40.5
Medtr1g013410 Medicago truncatula HOM05D000926 ORTHO05D000707 2.4e-07 58.9 90 35.6
Nn4g23604 Nelumbo nucifera HOM05D000926 ORTHO05D000707 2.4e-07 58.9 95 41.1
PGR042G0931 Punica granatum HOM05D000926 ORTHO05D000707 2.4e-07 58.9 95 41.1
CSS0017323 Camellia sinensis var. sinensis HOM05D000926 ORTHO05D000707 3.1e-07 58.5 94 41.5
CiPaw.03G080200 Carya illinoinensis HOM05D000926 ORTHO05D000707 3.1e-07 58.5 93 41.9
PSO017G6561 Papaver somniferum HOM05D000926 ORTHO05D000707 3.1e-07 58.5 93 43.0
Glyma.04G058800 Glycine max HOM05D000926 ORTHO05D000707 4.1e-07 58.2 87 41.4
Lalb_Chr21g0318771 Lupinus albus HOM05D000926 ORTHO05D000707 4.1e-07 58.2 83 37.3
Glyma.06G059500 Glycine max HOM05D000926 ORTHO05D000707 5.4e-07 57.8 88 42.0
MD17G1069200 Malus domestica HOM05D000926 ORTHO05D000707 5.4e-07 57.8 93 41.9
Oeu049341.1 Olea europaea HOM05D000926 ORTHO05D000707 5.4e-07 57.8 80 42.5
Psat0s2127g0040 Pisum sativum HOM05D000926 ORTHO05D000707 5.4e-07 57.8 99 35.4
Potri.004G108800 Populus trichocarpa HOM05D000926 ORTHO05D000707 5.4e-07 57.8 82 40.2
PGR004G2735 Punica granatum HOM05D000926 ORTHO05D000707 5.4e-07 57.8 81 42.0
Aqoxy3G00594 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 7.0e-07 57.4 81 37.0
Eucgr.J01435 Eucalyptus grandis HOM05D000926 ORTHO05D000707 7.0e-07 57.4 81 43.2
Gorai.001G039700 Gossypium raimondii HOM05D000926 ORTHO05D000707 7.0e-07 57.4 84 39.3
RcHm_v2.0_Chr2g0164101 Rosa chinensis HOM05D000926 ORTHO05D000707 7.0e-07 57.4 81 39.5
SalBow1G1369 Salvia bowleyana HOM05D000926 ORTHO05D000707 7.0e-07 57.4 81 42.0
Thecc.03G112300 Theobroma cacao HOM05D000926 ORTHO05D000707 7.0e-07 57.4 83 39.8
ATR0580G037 Amborella trichopoda HOM05D000926 ORTHO05D000707 9.2e-07 57.0 83 42.2
Lj1g0022964 Lotus japonicus HOM05D000926 ORTHO05D000707 9.2e-07 57.0 84 40.5
Medtr7g018090 Medicago truncatula HOM05D000926 ORTHO05D000707 9.2e-07 57.0 90 40.0
Oeu032854.1 Olea europaea HOM05D000926 ORTHO05D000707 9.2e-07 57.0 93 38.7
Solyc02g089450.1 Solanum lycopersicum HOM05D000926 ORTHO05D000707 9.2e-07 57.0 82 40.2
ClCG08G013870 Citrullus lanatus HOM05D000926 ORTHO05D000707 1.2e-06 56.6 93 38.7
FAN02G4043 Fragaria x ananassa HOM05D000926 ORTHO05D000707 1.2e-06 56.6 83 37.3
Glyma.19G038700 Glycine max HOM05D000926 ORTHO05D000707 1.2e-06 56.6 91 38.5
Gohir.A07G034350 Gossypium hirsutum HOM05D000926 ORTHO05D000707 1.2e-06 56.6 84 39.3
HanXRQChr09g0263311 Helianthus annuus HOM05D000926 ORTHO05D000707 1.2e-06 56.6 96 39.6
Medtr6g016480 Medicago truncatula HOM05D000926 ORTHO05D000707 1.2e-06 56.6 91 40.7
TPR.G38908 Trifolium pratense HOM05D000926 ORTHO05D000707 1.2e-06 56.6 85 35.3
CiPaw.08G003900 Carya illinoinensis HOM05D000926 ORTHO05D000707 1.6e-06 56.2 89 40.4
Cc07_g04740 Coffea canephora HOM05D000926 ORTHO05D000707 1.6e-06 56.2 97 36.1
COL.COLO4_19000 Corchorus olitorius HOM05D000926 ORTHO05D000707 1.6e-06 56.2 88 42.0
COL.COLO4_33437 Corchorus olitorius HOM05D000926 ORTHO05D000707 1.6e-06 56.2 80 38.8
Duzib187G1771 Durio zibethinus HOM05D000926 ORTHO05D000707 1.6e-06 56.2 87 37.9
Thhalv10005084m.g Eutrema salsugineum HOM05D000926 ORTHO05D000707 1.6e-06 56.2 81 42.0
Gohir.D07G037950 Gossypium hirsutum HOM05D000926 ORTHO05D000707 1.6e-06 56.2 84 39.3
Peaxi162Scf00479g00101 Petunia axillaris HOM05D000926 ORTHO05D000707 1.6e-06 56.2 84 40.5
Psat1g064720 Pisum sativum HOM05D000926 ORTHO05D000707 1.6e-06 56.2 91 39.6
Sabra17G0090200 Salix brachista HOM05D000926 ORTHO05D000707 1.6e-06 56.2 82 45.1
Sc10g0000430 Simmondsia chinensis HOM05D000926 ORTHO05D000707 1.6e-06 56.2 82 39.0
Solyc08g006520.1 Solanum lycopersicum HOM05D000926 ORTHO05D000707 1.6e-06 56.2 92 42.4
Ca_13080_v3 Cicer arietinum L. HOM05D000926 ORTHO05D000707 2.0e-06 55.8 83 34.9
DCAR_010990 Daucus carota HOM05D000926 ORTHO05D000707 2.0e-06 55.8 85 40.0
Dinv33888 Davidia involucrata HOM05D000926 ORTHO05D000707 2.0e-06 55.8 85 38.8
Eucgr.J01437 Eucalyptus grandis HOM05D000926 ORTHO05D000707 2.0e-06 55.8 81 42.0
FvH4_6g45911 Fragaria vesca HOM05D000926 ORTHO05D000707 2.0e-06 55.8 81 38.3
FAN05G2016 Fragaria x ananassa HOM05D000926 ORTHO05D000707 2.0e-06 55.8 81 38.3
Glyma.13G093500 Glycine max HOM05D000926 ORTHO05D000707 2.0e-06 55.8 82 41.5
Glyma.17G066900 Glycine max HOM05D000926 ORTHO05D000707 2.0e-06 55.8 82 41.5
Lju361C12T10 Lonicera japonica HOM05D000926 ORTHO05D000707 2.0e-06 55.8 98 39.8
Lj1g0009060 Lotus japonicus HOM05D000926 ORTHO05D000707 2.0e-06 55.8 81 42.0
Psat3g193960 Pisum sativum HOM05D000926 ORTHO05D000707 2.0e-06 55.8 83 37.3
TPR.G1895 Trifolium pratense HOM05D000926 ORTHO05D000707 2.0e-06 55.8 105 36.2
Aqoxy7G03167 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 2.7e-06 55.5 87 41.4
Ca_15794_v3 Cicer arietinum L. HOM05D000926 ORTHO05D000707 2.7e-06 55.5 86 38.4
MELO3C018927.2 Cucumis melo HOM05D000926 ORTHO05D000707 2.7e-06 55.5 78 41.0
DCAR_010193 Daucus carota HOM05D000926 ORTHO05D000707 2.7e-06 55.5 80 41.2
Nn3g17603 Nelumbo nucifera HOM05D000926 ORTHO05D000707 2.7e-06 55.5 93 35.5
Phvul.009G085200 Phaseolus vulgaris HOM05D000926 ORTHO05D000707 2.7e-06 55.5 102 40.2
TAR626G0668 Trochodendron aralioides HOM05D000926 ORTHO05D000707 2.7e-06 55.5 85 42.4
Aa31LG11G4120 Aethionema arabicum HOM05D000926 ORTHO05D000707 3.5e-06 55.1 84 38.1
Aqoxy7G02467 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 3.5e-06 55.1 83 41.0
MSTRG.2959 Avicennia marina HOM05D000926 ORTHO05D000707 3.5e-06 55.1 81 40.7
CiPaw.03G077200 Carya illinoinensis HOM05D000926 ORTHO05D000707 3.5e-06 55.1 83 39.8
CsaV3_1G003190 Cucumis sativus L. HOM05D000926 ORTHO05D000707 3.5e-06 55.1 81 40.7
FAN22G0045 Fragaria x ananassa HOM05D000926 ORTHO05D000707 3.5e-06 55.1 87 43.7
Hma1.2p1_2231F.1_g317580 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 3.5e-06 55.1 81 44.4
Phvul.003G181100 Phaseolus vulgaris HOM05D021696 ORTHO05D022751 3.5e-06 55.1 81 33.3
Sed0009643 Sechium edule HOM05D000926 ORTHO05D000707 3.5e-06 55.1 91 36.3
Sed0020062 Sechium edule HOM05D000926 ORTHO05D000707 3.5e-06 55.1 78 35.9
Thecc.09G010900 Theobroma cacao HOM05D000926 ORTHO05D000707 3.5e-06 55.1 87 37.9
TWI34G1370 Tripterygium wilfordii HOM05D000926 ORTHO05D000707 3.5e-06 55.1 83 38.6
Aqoxy3G03796 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 4.5e-06 54.7 92 42.4
Aqoxy3G03797 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 4.5e-06 54.7 91 38.5
CAN.G497.35 Capsicum annuum HOM05D000926 ORTHO05D000707 4.5e-06 54.7 82 35.4
CDE04G3009 Ceratophyllum demersum HOM05D000926 ORTHO05D000707 4.5e-06 54.7 84 40.5
Hma1.2p1_0588F.1_g184550 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 4.5e-06 54.7 81 42.0
Sabra04G0074000 Salix brachista HOM05D000926 ORTHO05D000707 4.5e-06 54.7 80 41.2
PGSC0003DMG400001476 Solanum tuberosum HOM05D000926 ORTHO05D000707 4.5e-06 54.7 87 41.4
PGSC0003DMG400026291 Solanum tuberosum HOM05D000926 ORTHO05D000707 4.5e-06 54.7 92 42.4
Aa31LG9G16890 Aethionema arabicum HOM05D000926 ORTHO05D000707 5.9e-06 54.3 80 36.2
AL7G27280 Arabidopsis lyrata HOM05D000926 ORTHO05D000707 5.9e-06 54.3 88 40.9
A06p35710 Brassica napus HOM05D000926 ORTHO05D000707 5.9e-06 54.3 81 40.7
BraA06t26495Z Brassica rapa HOM05D000926 ORTHO05D000707 5.9e-06 54.3 81 40.7
DCAR_002021 Daucus carota HOM05D000926 ORTHO05D000707 5.9e-06 54.3 85 41.2
DCAR_026290 Daucus carota HOM05D000926 ORTHO05D000707 5.9e-06 54.3 77 41.6
Duzib084G0718 Durio zibethinus HOM05D059722 ORTHO05D044716 5.9e-06 54.3 95 35.8
Migut.K00874 Erythranthe guttata HOM05D000926 ORTHO05D000707 5.9e-06 54.3 81 39.5
Gohir.A05G062600 Gossypium hirsutum HOM05D000926 ORTHO05D000707 5.9e-06 54.3 88 40.9
Gohir.D05G065100 Gossypium hirsutum HOM05D000926 ORTHO05D000707 5.9e-06 54.3 88 40.9
Medtr1g013430 Medicago truncatula HOM05D000926 ORTHO05D000707 5.9e-06 54.3 90 32.2
Nitab4.5_0005612g0020 Nicotiana tabacum HOM05D000926 ORTHO05D000707 5.9e-06 54.3 104 34.6
Psat1g064600 Pisum sativum HOM05D000926 ORTHO05D000707 5.9e-06 54.3 91 38.5
Potri.006G267900 Populus trichocarpa HOM05D000926 ORTHO05D000707 5.9e-06 54.3 100 35.0
Sopen08g002480 Solanum pennellii HOM05D000926 ORTHO05D000707 5.9e-06 54.3 92 40.2
Carub.0004s0440 Capsella rubella HOM05D000926 ORTHO05D000707 7.8e-06 53.9 87 39.1
Cpa.g.sc70.7 Carica papaya HOM05D000926 ORTHO05D000707 7.8e-06 53.9 97 41.2
Ciclev10009695m.g Citrus clementina HOM05D000926 ORTHO05D000707 7.8e-06 53.9 92 40.2
Lsat_1_v5_gn_3_95661 Lactuca sativa HOM05D000926 ORTHO05D000707 7.8e-06 53.9 80 42.5
Lj4g0013069 Lotus japonicus HOM05D000926 ORTHO05D000707 7.8e-06 53.9 84 41.7
Manes.06G028600 Manihot esculenta HOM05D000926 ORTHO05D000707 7.8e-06 53.9 89 39.3
Potri.004G108560 Populus trichocarpa HOM05D000926 ORTHO05D000707 7.8e-06 53.9 79 41.8
HPP92_017153 Vanilla planifolia HOM05D000926 ORTHO05D000707 7.8e-06 53.9 83 37.3


User provided reference genes

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