Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042312 Camellia sinensis var. sinensis HOM05D006805 ORTHO05D008656 4.7e-249 864.0 413 100.0
Rhsim08G0122900 Rhododendron simsii HOM05D006805 ORTHO05D008656 3.2e-197 691.8 414 80.7
GSVIVG01018866001 Vitis vinifera HOM05D006805 ORTHO05D008656 2.5e-194 682.2 413 77.7
Dinv40030 Davidia involucrata HOM05D006805 ORTHO05D008656 3.8e-190 668.3 430 75.3
Prupe.7G161800 Prunus persica HOM05D006805 ORTHO05D008656 5.6e-186 654.4 418 73.4
Hma1.2p1_0913F.1_g235930 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 1.8e-184 649.4 413 74.3
QL06p035053 Quercus lobata HOM05D006805 ORTHO05D008656 4.0e-184 648.3 398 77.1
CiPaw.08G138000 Carya illinoinensis HOM05D006805 ORTHO05D008656 1.9e-181 639.4 402 74.9
Solyc02g084810.3 Solanum lycopersicum HOM05D006805 ORTHO05D008656 4.2e-181 638.3 415 71.8
Sopen02g029480 Solanum pennellii HOM05D006805 ORTHO05D008656 9.3e-181 637.1 415 71.6
Nn1g05800 Nelumbo nucifera HOM05D006805 ORTHO05D008656 3.0e-179 632.1 413 71.7
Atru.chr3.728 Acer truncatum HOM05D006805 ORTHO05D008656 6.7e-179 630.9 399 73.7
FvH4_1g12510 Fragaria vesca HOM05D006805 ORTHO05D008656 6.7e-179 630.9 413 71.2
RcHm_v2.0_Chr2g0100411 Rosa chinensis HOM05D006805 ORTHO05D008656 6.7e-179 630.9 414 70.5
TAR381G0553 Trochodendron aralioides HOM05D006805 ORTHO05D008656 1.1e-178 630.2 413 72.2
CAN.G358.30 Capsicum annuum HOM05D006805 ORTHO05D008656 1.9e-178 629.4 415 70.4
Peaxi162Scf00418g00926 Petunia axillaris HOM05D006805 ORTHO05D008656 2.5e-178 629.0 400 72.2
TWI73G0963 Tripterygium wilfordii HOM05D006805 ORTHO05D008656 3.1e-176 622.1 396 72.2
FAN19G2522 Fragaria x ananassa HOM05D006805 ORTHO05D008656 1.3e-174 616.7 426 68.8
MSTRG.2490 Avicennia marina HOM05D006805 ORTHO05D008656 2.2e-174 615.9 399 72.2
Potri.007G019400 Populus trichocarpa HOM05D006805 ORTHO05D008656 2.2e-174 615.9 414 70.0
Thecc.01G027300 Theobroma cacao HOM05D006805 ORTHO05D008656 2.2e-174 615.9 400 72.0
Cfa006913 Carpinus fangiana HOM05D006805 ORTHO05D008656 5.0e-174 614.8 397 73.3
CANSAT01G1867 Cannabis sativa HOM05D006805 ORTHO05D008656 6.5e-174 614.4 397 71.3
Aqoxy5G01548 Aquilegia oxysepala HOM05D006805 ORTHO05D008656 5.5e-173 611.3 384 74.0
MD15G1252400 Malus domestica HOM05D006805 ORTHO05D008656 7.2e-173 610.9 411 70.3
PSO731G0058 Papaver somniferum HOM05D006805 ORTHO05D008656 1.6e-172 609.8 415 68.7
THA.LOC104804245 Tarenaya hassleriana HOM05D006805 ORTHO05D008656 1.3e-171 606.7 412 68.4
COL.COLO4_22005 Corchorus olitorius HOM05D006805 ORTHO05D008656 6.7e-171 604.4 416 69.0
Hund16454 Selenicereus undatus HOM05D006805 ORTHO05D008656 6.7e-171 604.4 406 70.2
PGR102G0609 Punica granatum HOM05D006805 ORTHO05D008656 1.6e-169 599.7 392 71.2
Nitab4.5_0004708g0010 Nicotiana tabacum HOM05D006805 ORTHO05D008656 4.8e-169 598.2 412 68.0
Manes.01G140000 Manihot esculenta HOM05D006805 ORTHO05D008656 1.8e-168 596.3 415 68.4
Duzib147G1209 Durio zibethinus HOM05D006805 ORTHO05D008656 4.1e-168 595.1 401 68.8
Cc07_g10060 Coffea canephora HOM05D006805 ORTHO05D008656 6.9e-168 594.3 396 69.7
Gorai.003G012500 Gossypium raimondii HOM05D006805 ORTHO05D008656 1.2e-167 593.6 393 70.0
Sed0012409 Sechium edule HOM05D006805 ORTHO05D008656 1.3e-166 590.1 400 68.5
Gohir.A02G167800 Gossypium hirsutum HOM05D006805 ORTHO05D008656 3.8e-166 588.6 393 69.2
Gohir.D03G012200 Gossypium hirsutum HOM05D006805 ORTHO05D008656 3.8e-166 588.6 393 69.2
VMungo0251G3732 Vigna mungo HOM05D006805 ORTHO05D008656 5.0e-166 588.2 398 68.8
Migut.H02510 Erythranthe guttata HOM05D006805 ORTHO05D008656 6.5e-166 587.8 411 69.1
CsaV3_6G046700 Cucumis sativus L. HOM05D006805 ORTHO05D008656 1.9e-165 586.3 404 67.8
Phvul.003G257300 Phaseolus vulgaris HOM05D006805 ORTHO05D008656 1.6e-164 583.2 391 68.8
Glyma.02G052900 Glycine max HOM05D006805 ORTHO05D008656 1.0e-163 580.5 401 68.3
Lj4g0018076 Lotus japonicus HOM05D006805 ORTHO05D008656 5.1e-163 578.2 397 69.0
MELO3C007867.2 Cucumis melo HOM05D006805 ORTHO05D008656 4.3e-162 575.1 432 63.7
Haze_03843 Corylus avellana HOM05D006805 ORTHO05D008656 2.2e-161 572.8 451 64.1
Psat4g096160 Pisum sativum HOM05D006805 ORTHO05D008656 2.2e-161 572.8 395 67.8
Eucgr.J02381 Eucalyptus grandis HOM05D006805 ORTHO05D008656 1.8e-160 569.7 410 66.1
Lalb_Chr16g0391011 Lupinus albus HOM05D006805 ORTHO05D008656 7.7e-159 564.3 389 67.4
Sabra07G0016600 Salix brachista HOM05D006805 ORTHO05D008656 1.3e-158 563.5 420 64.8
SGA_v2.0_scaffold51G18803 Striga asiatica HOM05D006805 ORTHO05D008656 1.3e-158 563.5 459 60.6
Medtr8g076840 Medicago truncatula HOM05D006805 ORTHO05D008656 5.0e-158 561.6 393 67.7
Thhalv10025347m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 8.5e-158 560.8 403 64.5
HanXRQChr14g0441241 Helianthus annuus HOM05D006805 ORTHO05D008656 8.5e-158 560.8 395 65.8
arahy.Tifrunner.gnm1.ann1.P9L48X Arachis hypogaea HOM05D006805 ORTHO05D008656 1.1e-157 560.5 398 67.8
Nitab4.5_0000723g0180 Nicotiana tabacum HOM05D006805 ORTHO05D008656 1.4e-157 560.1 406 66.5
Thhalv10000178m.g Eutrema salsugineum HOM05D006805 ORTHO05D008656 1.9e-157 559.7 416 63.5
vmacro17722 Vaccinium macrocarpon HOM05D006805 ORTHO05D008656 2.5e-157 559.3 351 76.6
AL7G14650 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 9.4e-157 557.4 409 63.3
Ciclev10025725m.g Citrus clementina HOM05D006805 ORTHO05D008656 9.4e-157 557.4 351 74.1
DCAR_025973 Daucus carota HOM05D006805 ORTHO05D008656 9.4e-157 557.4 398 67.1
Carub.0007s0387 Capsella rubella HOM05D006805 ORTHO05D008656 2.7e-156 555.8 408 63.2
Sp7g34100 Schrenkiella parvula HOM05D006805 ORTHO05D008656 4.7e-156 555.1 415 63.1
CARHR244770 Cardamine hirsuta HOM05D006805 ORTHO05D008656 7.9e-156 554.3 387 65.1
FAN23G0481 Fragaria x ananassa HOM05D006805 ORTHO05D008656 6.7e-155 551.2 420 63.8
arahy.Tifrunner.gnm1.ann1.FKKR7E Arachis hypogaea HOM05D006805 ORTHO05D008656 1.1e-154 550.4 379 68.6
C01p02610 Brassica napus HOM05D006805 ORTHO05D008656 1.7e-153 546.6 386 64.8
BolC1t00250H Brassica oleracea HOM05D006805 ORTHO05D008656 2.2e-153 546.2 405 63.5
BcaNung00732 Brassica carinata HOM05D006805 ORTHO05D008656 6.3e-153 544.7 386 64.5
Duzib264G1030 Durio zibethinus HOM05D006805 ORTHO05D008656 1.2e-151 540.4 409 64.3
BraA01t00229Z Brassica rapa HOM05D006805 ORTHO05D008656 2.6e-151 539.3 414 62.1
ECA238G0382 Erigeron canadensis HOM05D006805 ORTHO05D008656 4.5e-151 538.5 388 62.4
AUR62007618 Chenopodium quinoa HOM05D006805 ORTHO05D008656 1.0e-150 537.3 374 68.7
AT4G36440 Arabidopsis thaliana HOM05D006805 ORTHO05D008656 1.5e-149 533.5 410 62.0
A01p02400 Brassica napus HOM05D000394 ORTHO05D008656 4.2e-149 531.9 418 60.5
SalBow8G5631 Salvia bowleyana HOM05D006805 ORTHO05D008656 1.0e-142 510.8 420 59.0
HPP92_008328 Vanilla planifolia HOM05D006805 ORTHO05D008656 5.5e-141 505.0 381 61.2
Ca_22341_v3 Cicer arietinum L. HOM05D006805 ORTHO05D008656 1.3e-137 493.8 392 62.0
ClCG01G019940 Citrullus lanatus HOM05D006531 ORTHO05D008656 3.7e-137 492.3 460 55.0
ATR1154G040 Amborella trichopoda HOM05D006805 ORTHO05D008656 1.7e-134 483.4 351 65.8
Hma1.2p1_0913F.1_g235940 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 2.9e-134 482.6 288 78.1
Hma1.2p1_2955F.1_g330740 Hydrangea macrophylla HOM05D006805 ORTHO05D008656 8.0e-132 474.6 341 68.3
BcaNung05308 Brassica carinata HOM05D000394 ORTHO05D000299 2.3e-131 473.0 351 62.4
CDE06G0805 Ceratophyllum demersum HOM05D006805 ORTHO05D008656 2.6e-130 469.5 355 64.2
FAN26G3258 Fragaria x ananassa HOM05D006805 ORTHO05D008656 7.5e-130 468.0 420 57.6
MBI16_g23836_MAGBIO Magnolia biondii HOM05D006805 ORTHO05D008656 1.8e-120 436.8 357 61.1
Aa31LG6G13250 Aethionema arabicum HOM05D006805 ORTHO05D008656 2.0e-114 416.8 322 60.6
unitig_61.g26353 Utricularia gibba HOM05D006805 ORTHO05D008656 4.4e-114 415.6 398 53.3
Lj4C209T2 Lonicera japonica HOM05D006805 ORTHO05D008656 2.3e-107 393.3 255 75.7
AUR62004104 Chenopodium quinoa HOM05D006805 ORTHO05D008656 1.8e-99 367.1 252 69.4
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 2.2e-97 360.1 252 69.0
EL10As8g23891 Beta vulgaris HOM05D006805 ORTHO05D008656 1.6e-95 354.0 213 74.2
arahy.Tifrunner.gnm1.ann1.CY3TH7 Arachis hypogaea HOM05D006805 ORTHO05D008656 2.3e-94 350.1 425 47.3
AagrBONN_evm.TU.Sc2ySwM_228.1023 Anthoceros agrestis HOM05D006805 ORTHO05D001783 1.5e-93 347.4 401 44.1
Cpa.g.sc6.179 Carica papaya HOM05D006805 ORTHO05D008656 7.8e-87 325.1 390 45.1
Sc03g0003190 Simmondsia chinensis HOM05D006805 ORTHO05D008656 2.3e-86 323.6 398 46.2
SMO141G0060 Selaginella moellendorffii HOM05D006805 ORTHO05D008656 5.6e-85 318.9 334 46.4
Mapoly0033s0048 Marchantia polymorpha HOM05D006805 ORTHO05D008656 2.0e-82 310.5 400 40.5
Pp3c9_15730 Physcomitrium patens HOM05D006805 ORTHO05D008656 2.6e-82 310.1 393 42.7
SGA_v2.0_scaffold7G03543 Striga asiatica HOM05D006805 ORTHO05D003527 4.9e-81 305.8 211 68.7
Pp3c15_5920 Physcomitrium patens HOM05D006805 ORTHO05D008656 3.5e-79 299.7 377 41.9
TPR.G21535 Trifolium pratense HOM05D006805 ORTHO05D008656 1.9e-69 267.3 170 72.9
Lsat_1_v5_gn_2_78040 Lactuca sativa HOM05D006805 ORTHO05D008656 3.1e-67 260.0 221 58.8
HanXRQChr12g0370271 Helianthus annuus HOM05D006805 ORTHO05D008656 1.1e-61 241.5 212 56.6
Zm00001eb128340 Zea mays HOM05D006805 ORTHO05D008656 1.2e-58 231.5 182 61.0
AL6G38800 Arabidopsis lyrata HOM05D006805 ORTHO05D008656 1.3e-57 228.0 187 58.3
Dinv10224 Davidia involucrata HOM05D006805 ORTHO05D008656 2.5e-56 223.8 137 75.9
HanXRQChr16g0499431 Helianthus annuus HOM05D006805 ORTHO05D008656 5.0e-49 199.5 294 40.1
HanXRQChr09g0256121 Helianthus annuus HOM05D006805 ORTHO05D008656 8.5e-49 198.7 294 42.5
TPR.G21539 Trifolium pratense HOM05D000894 ORTHO05D001833 4.6e-47 193.0 130 67.7
Glyma.16G133100 Glycine max HOM05D006805 ORTHO05D008656 5.1e-46 189.5 120 69.2
Lj2g0002148 Lotus japonicus HOM05D006805 ORTHO05D008656 3.6e-39 166.8 97 76.3
Glyma.10G129950 Glycine max HOM05D006805 ORTHO05D008656 1.8e-35 154.5 112 63.4
EL10Ac7g17413 Beta vulgaris HOM05D006805 ORTHO05D008656 2.5e-32 144.1 105 59.0
MD02G1139100 Malus domestica HOM05D006805 ORTHO05D008656 1.6e-26 124.8 107 57.0
Os01g0262700 Oryza sativa ssp. japonica HOM05D006805 ORTHO05D008656 2.2e-25 120.9 104 53.8
HanXRQChr12g0370281 Helianthus annuus HOM05D006805 ORTHO05D008656 2.9e-17 94.0 86 54.7
Pp3c26_9360 Physcomitrium patens HOM05D006805 ORTHO05D008656 8.3e-12 75.9 95 43.2
RcHm_v2.0_Chr2g0136281 Rosa chinensis HOM05D006805 ORTHO05D008656 3.5e-10 70.5 42 76.2
Aa31LG6G13240 Aethionema arabicum HOM05D006805 ORTHO05D008656 1.6e-07 61.6 65 46.2


User provided reference genes

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