Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042303 Camellia sinensis var. sinensis HOM05D028518 ORTHO05D013819 2.4e-217 758.4 354 100.0
CSS0020144 Camellia sinensis var. sinensis HOM05D028518 ORTHO05D013819 1.5e-182 642.9 354 87.6
CSS0014054 Camellia sinensis var. sinensis HOM05D028518 ORTHO05D013819 1.3e-103 380.6 355 58.0
CSS0028420 Camellia sinensis var. sinensis HOM05D028518 ORTHO05D013819 5.0e-98 362.1 354 56.2
Rhsim09G0114300 Rhododendron simsii HOM05D012919 ORTHO05D013819 2.2e-29 134.0 391 30.4
Dinv01717 Davidia involucrata HOM05D011324 ORTHO05D013448 3.7e-29 133.3 350 28.6
Rhsim01G0004100 Rhododendron simsii HOM05D012919 ORTHO05D013819 6.4e-29 132.5 276 33.7
Dinv28170 Davidia involucrata HOM05D011324 ORTHO05D013448 2.4e-28 130.6 349 28.1
vmacro07913 Vaccinium macrocarpon HOM05D012919 ORTHO05D013819 1.6e-27 127.9 353 29.2
Dinv28167 Davidia involucrata HOM05D011324 ORTHO05D013448 2.1e-27 127.5 350 28.0
Dinv28164 Davidia involucrata HOM05D011324 ORTHO05D013448 6.0e-27 125.9 350 28.6
vmacro07414 Vaccinium macrocarpon HOM05D012919 ORTHO05D013819 1.3e-26 124.8 365 29.9
vmacro07415 Vaccinium macrocarpon HOM05D012919 ORTHO05D013819 1.3e-26 124.8 365 29.9
vmacro22790 Vaccinium macrocarpon HOM05D012919 ORTHO05D013819 1.7e-26 124.4 354 29.9
vmacro23393 Vaccinium macrocarpon HOM05D012919 ORTHO05D013819 1.7e-26 124.4 354 29.9
Dinv28165 Davidia involucrata HOM05D011324 ORTHO05D013448 3.0e-26 123.6 352 27.8
Rhsim11G0078200 Rhododendron simsii HOM05D012919 ORTHO05D013819 3.0e-26 123.6 372 29.8
vmacro23394 Vaccinium macrocarpon HOM05D012919 ORTHO05D013819 3.9e-26 123.2 356 29.8
Rhsim03G0269100 Rhododendron simsii HOM05D012919 ORTHO05D013819 6.6e-26 122.5 321 31.8
Dinv28172 Davidia involucrata HOM05D011324 ORTHO05D013448 8.9e-23 112.1 349 26.4
Dinv28162 Davidia involucrata HOM05D011324 ORTHO05D013448 3.9e-18 96.7 178 34.8
Dinv25052 Davidia involucrata HOM05D011324 ORTHO05D013448 2.5e-17 94.0 209 34.0
Aqoxy2G03423 Aquilegia oxysepala HOM05D011324 ORTHO05D013448 2.1e-16 90.9 235 30.2
Dinv28168 Davidia involucrata HOM05D011324 ORTHO05D013448 2.6e-14 84.0 232 27.2
Thecc.07G157200 Theobroma cacao HOM05D009781 ORTHO05D011819 3.4e-14 83.6 215 31.2
Gohir.D06G037800 Gossypium hirsutum HOM05D009781 ORTHO05D011819 5.4e-12 76.3 186 32.3
Gohir.D08G028000 Gossypium hirsutum HOM05D009781 ORTHO05D011819 9.3e-12 75.5 187 32.1
Gohir.A11G324800 Gossypium hirsutum HOM05D009781 ORTHO05D011819 1.6e-11 74.7 185 31.4
CSS0001088 Camellia sinensis var. sinensis HOM05D012885 ORTHO05D010877 3.5e-11 73.6 206 29.1
Gohir.D06G036500 Gossypium hirsutum HOM05D009781 ORTHO05D011819 3.5e-11 73.6 188 31.4
Gorai.010G040800 Gossypium raimondii HOM05D009781 ORTHO05D011819 3.5e-11 73.6 188 31.4
Gorai.010G041400 Gossypium raimondii HOM05D009781 ORTHO05D011819 4.6e-11 73.2 185 31.4
SGA_v2.0_scaffold130G34356 Striga asiatica HOM05D017380 ORTHO05D019049 6.0e-11 72.8 173 34.1
CSS0013471 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 3.0e-10 70.5 217 29.5
CSS0028906 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 3.9e-10 70.1 217 29.0
Gohir.A06G038600 Gossypium hirsutum HOM05D009781 ORTHO05D011819 3.9e-10 70.1 189 30.2
Gohir.A06G044600 Gossypium hirsutum HOM05D009781 ORTHO05D011819 5.6e-09 66.2 187 28.3
COL.COLO4_31291 Corchorus olitorius HOM05D017380 ORTHO05D019049 7.3e-09 65.9 310 23.9
Thhalv10025408m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.6e-08 64.7 152 31.6
Gohir.A06G038813 Gossypium hirsutum HOM05D009781 ORTHO05D011819 4.8e-08 63.2 189 29.6
Actinidia16043 Actinidia chinensis HOM05D000249 ORTHO05D000206 8.1e-08 62.4 238 27.3
CSS0033575 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D010877 8.1e-08 62.4 185 30.3
Gorai.010G041700 Gossypium raimondii HOM05D009781 ORTHO05D011819 1.4e-07 61.6 159 33.3
Rhsim10G0150200 Rhododendron simsii HOM05D000249 ORTHO05D000206 2.4e-07 60.8 213 26.8
COL.COLO4_11012 Corchorus olitorius HOM05D000249 ORTHO05D000206 6.9e-07 59.3 205 28.3
Gohir.A06G038742 Gossypium hirsutum HOM05D009781 ORTHO05D011819 6.9e-07 59.3 182 28.0
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 6.9e-07 59.3 99 36.4
Aqoxy3G04200 Aquilegia oxysepala HOM05D010066 ORTHO05D011146 9.0e-07 58.9 135 28.9
Carub.0007s3641 Capsella rubella HOM05D000249 ORTHO05D000206 1.2e-06 58.5 206 28.2
COL.COLO4_22990 Corchorus olitorius HOM05D017380 ORTHO05D019049 3.4e-06 57.0 71 40.8
AL4G24320 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 9.9e-06 55.5 196 28.6


User provided reference genes

Program Settings