Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 1.8e-99 366.3 249 100.0
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 2.9e-44 183.0 242 62.0
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 4.6e-42 175.6 104 86.5
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 4.6e-42 175.6 104 86.5
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 1.0e-41 174.5 104 87.5
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 1.8e-41 173.7 104 82.7
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 2.3e-41 173.3 251 55.4
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 1.5e-40 170.6 104 82.7
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 1.5e-40 170.6 104 81.7
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.9e-40 170.2 104 86.5
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 2.5e-40 169.9 177 70.1
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 2.5e-40 169.9 104 80.8
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 4.3e-40 169.1 104 83.7
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 5.7e-40 168.7 104 80.8
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 7.4e-40 168.3 104 79.8
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 9.7e-40 167.9 251 59.4
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 9.7e-40 167.9 104 79.8
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 1.3e-39 167.5 104 82.7
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 1.6e-39 167.2 104 81.7
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 1.6e-39 167.2 104 79.8
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 2.2e-39 166.8 103 83.5
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 2.2e-39 166.8 104 79.8
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 2.8e-39 166.4 104 80.8
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 3.7e-39 166.0 259 57.1
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 4.8e-39 165.6 103 80.6
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 6.3e-39 165.2 104 80.8
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 6.3e-39 165.2 104 80.8
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 6.3e-39 165.2 104 80.8
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 6.3e-39 165.2 104 77.9
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 6.3e-39 165.2 183 61.2
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 8.2e-39 164.9 104 82.7
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 8.2e-39 164.9 104 80.8
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 8.2e-39 164.9 104 78.8
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 8.2e-39 164.9 104 80.8
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 8.2e-39 164.9 104 80.8
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 8.2e-39 164.9 104 79.8
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 8.2e-39 164.9 104 80.8
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 1.1e-38 164.5 104 79.8
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 1.1e-38 164.5 104 80.8
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 1.1e-38 164.5 104 79.8
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 1.4e-38 164.1 104 80.8
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 1.4e-38 164.1 104 79.8
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 1.8e-38 163.7 104 80.8
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 1.8e-38 163.7 104 79.8
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 2.4e-38 163.3 103 81.6
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 3.1e-38 162.9 104 79.8
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 3.1e-38 162.9 104 79.8
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 4.1e-38 162.5 104 77.9
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 5.3e-38 162.2 104 81.7
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 6.9e-38 161.8 102 79.4
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 6.9e-38 161.8 101 81.2
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 1.5e-37 160.6 104 77.9
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 2.0e-37 160.2 214 61.2
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.0e-37 160.2 104 79.8
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 2.0e-37 160.2 104 78.8
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 2.6e-37 159.8 104 77.9
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 2.6e-37 159.8 103 78.6
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 2.6e-37 159.8 103 78.6
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 4.5e-37 159.1 104 76.0
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 5.9e-37 158.7 103 77.7
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 5.9e-37 158.7 103 78.6
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 1.0e-36 157.9 102 77.5
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 1.7e-36 157.1 225 50.7
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 2.9e-36 156.4 104 78.8
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 3.8e-36 156.0 101 77.2
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 5.0e-36 155.6 104 78.8
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 5.0e-36 155.6 127 67.7
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 6.5e-36 155.2 111 76.6
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 8.5e-36 154.8 104 78.8
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 8.5e-36 154.8 101 77.2
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 1.1e-35 154.5 104 74.0
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 1.1e-35 154.5 104 76.9
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 1.4e-35 154.1 104 73.1
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 1.9e-35 153.7 104 77.9
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.9e-35 153.7 104 77.9
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 2.5e-35 153.3 104 76.9
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 2.5e-35 153.3 104 76.9
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 2.5e-35 153.3 104 76.0
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 3.2e-35 152.9 104 76.0
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 4.2e-35 152.5 102 78.4
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 4.2e-35 152.5 104 75.0
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 4.2e-35 152.5 104 76.9
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 1.2e-34 151.0 104 75.0
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 1.6e-34 150.6 104 74.0
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 2.7e-34 149.8 104 74.0
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 3.6e-34 149.4 103 73.8
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 6.1e-34 148.7 103 73.8
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 6.1e-34 148.7 100 76.0
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 7.9e-34 148.3 91 80.2
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 7.9e-34 148.3 104 72.1
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 2.3e-33 146.7 104 72.1
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 6.7e-33 145.2 102 71.6
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 8.8e-33 144.8 104 70.2
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 1.9e-32 143.7 104 69.2
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 5.7e-32 142.1 104 70.2
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 5.7e-32 142.1 104 70.2
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 2.2e-31 140.2 104 68.3
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 2.8e-31 139.8 104 68.3
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 2.8e-31 139.8 100 69.0
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 3.7e-31 139.4 104 69.2
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 3.7e-31 139.4 104 69.2
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 3.7e-31 139.4 104 69.2
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 3.7e-31 139.4 104 69.2
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 3.7e-31 139.4 104 69.2
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 4.8e-31 139.0 104 69.2
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 4.8e-31 139.0 103 66.0
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 6.3e-31 138.7 104 69.2
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 6.3e-31 138.7 104 75.0
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 8.2e-31 138.3 104 66.3
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 8.2e-31 138.3 101 70.3
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 8.2e-31 138.3 96 76.0
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 8.2e-31 138.3 96 76.0
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 2.4e-30 136.7 101 69.3
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 3.1e-30 136.3 104 68.3
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 5.3e-30 135.6 104 68.3
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.6e-29 133.3 97 69.1
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 3.4e-29 132.9 104 65.4
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 7.7e-29 131.7 102 68.6
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 1.0e-28 131.3 104 64.4
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 5.0e-28 129.0 102 61.8
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 1.9e-27 127.1 109 64.2
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 3.2e-27 126.3 101 63.4
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 5.5e-27 125.6 101 63.4
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 1.6e-26 124.0 101 59.4
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 2.1e-26 123.6 101 62.4
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 2.1e-26 123.6 101 62.4
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 2.1e-26 123.6 101 62.4
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 2.1e-26 123.6 101 62.4
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 2.1e-26 123.6 101 62.4
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 2.1e-26 123.6 101 64.4
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 2.1e-26 123.6 101 62.4
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 2.7e-26 123.2 101 62.4
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 3.6e-26 122.9 101 62.4
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 3.6e-26 122.9 95 64.2
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 1.5e-24 117.5 101 61.4
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 5.0e-20 102.4 85 61.2
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 1.7e-15 87.4 101 47.5
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.6e-13 80.9 57 73.7
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 4.2e-11 72.8 60 65.0
Zm00001eb041420 Zea mays HOM05D001962 ORTHO05D002236 2.2e-07 60.5 35 85.7
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 6.3e-07 58.9 59 61.0
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 1.4e-06 57.8 51 60.8
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 1.8e-06 57.4 59 59.3
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 4.1e-06 56.2 99 41.4
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 5.3e-06 55.8 103 40.8
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 5.3e-06 55.8 103 40.8
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 7.0e-06 55.5 96 40.6
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 9.1e-06 55.1 102 39.2


User provided reference genes

Program Settings