Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042295 Camellia sinensis var. sinensis HOM05D058386 ORTHO05D033915 3.4e-65 251.5 129 100.0
CSS0027875 Camellia sinensis var. sinensis HOM05D058386 ORTHO05D033915 6.1e-62 240.7 129 95.3
Actinidia35252 Actinidia chinensis HOM05D000300 ORTHO05D000383 6.4e-19 97.8 81 71.6
Dinv04312 Davidia involucrata HOM05D000114 ORTHO05D000075 5.4e-18 94.7 84 66.7
Actinidia09678 Actinidia chinensis HOM05D000803 ORTHO05D001162 1.2e-17 93.6 84 67.9
Dinv20167 Davidia involucrata HOM05D000463 ORTHO05D001294 1.6e-17 93.2 84 67.9
Actinidia18765 Actinidia chinensis HOM05D000803 ORTHO05D001162 2.0e-17 92.8 81 69.1
CSS0007021 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D001162 3.5e-17 92.0 85 67.1
Actinidia12815 Actinidia chinensis HOM05D000463 ORTHO05D001294 3.0e-16 89.0 84 64.3
Lsat_1_v5_gn_7_105180 Lactuca sativa HOM05D000803 ORTHO05D001162 6.6e-16 87.8 87 64.4
Rhsim04G0020500 Rhododendron simsii HOM05D000397 ORTHO05D002023 5.6e-15 84.7 81 64.2
Hma1.2p1_1620F.1_g294000 Hydrangea macrophylla HOM05D000803 ORTHO05D001162 1.2e-14 83.6 92 57.6
ECA236G4303 Erigeron canadensis HOM05D000803 ORTHO05D001162 2.1e-14 82.8 87 60.9
Lsat_1_v5_gn_9_96840 Lactuca sativa HOM05D000803 ORTHO05D001162 2.1e-14 82.8 88 64.8
Hma1.2p1_0932F.1_g238250 Hydrangea macrophylla HOM05D000803 ORTHO05D001162 1.1e-13 80.5 92 55.4
Rhsim06G0197400 Rhododendron simsii HOM05D000803 ORTHO05D001162 1.1e-13 80.5 87 60.9
vmacro11849 Vaccinium macrocarpon HOM05D000803 ORTHO05D001162 1.8e-13 79.7 86 59.3
HanXRQChr10g0302791 Helianthus annuus HOM05D000803 ORTHO05D001162 3.1e-13 79.0 86 58.1
Nitab4.5_0002383g0100 Nicotiana tabacum HOM05D000803 ORTHO05D001162 6.8e-13 77.8 82 59.8
Nitab4.5_0000207g0140 Nicotiana tabacum HOM05D000803 ORTHO05D001162 8.9e-13 77.4 82 58.5
vmacro09536 Vaccinium macrocarpon HOM05D000803 ORTHO05D001162 1.5e-12 76.6 81 58.0
HanXRQChr11g0328441 Helianthus annuus HOM05D000803 ORTHO05D001162 2.6e-12 75.9 87 57.5
Hma1.2p1_0480F.1_g161820 Hydrangea macrophylla HOM05D000803 ORTHO05D001162 4.4e-12 75.1 85 60.0
CiPaw.11G168300 Carya illinoinensis HOM05D000803 ORTHO05D001162 1.7e-11 73.2 87 55.2
DCAR_019548 Daucus carota HOM05D000803 ORTHO05D001162 1.1e-10 70.5 81 59.3
Hma1.2p1_2210F.1_g317170 Hydrangea macrophylla HOM05D000803 ORTHO05D001162 1.1e-10 70.5 84 58.3
GSVIVG01014360001 Vitis vinifera HOM05D000803 ORTHO05D001162 1.1e-10 70.5 84 52.4
Cfa020599 Carpinus fangiana HOM05D000803 ORTHO05D001162 1.9e-10 69.7 83 55.4
Cc05_g12140 Coffea canephora HOM05D000803 ORTHO05D001162 1.9e-10 69.7 81 60.5
Nitab4.5_0013630g0030 Nicotiana tabacum HOM05D000803 ORTHO05D001162 9.2e-10 67.4 82 56.1
Sopen07g031380 Solanum pennellii HOM05D000803 ORTHO05D001162 1.2e-09 67.0 82 51.2
TWI38G1250 Tripterygium wilfordii HOM05D000803 ORTHO05D001162 1.2e-09 67.0 93 46.2
Haze_09415 Corylus avellana HOM05D000803 ORTHO05D001162 1.6e-09 66.6 83 51.8
Oeu005416.1 Olea europaea HOM05D000803 ORTHO05D001162 1.6e-09 66.6 79 54.4
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 2.0e-09 66.2 85 52.9
Nitab4.5_0001551g0090 Nicotiana tabacum HOM05D000803 ORTHO05D001162 2.0e-09 66.2 82 52.4
PGSC0003DMG400012420 Solanum tuberosum HOM05D000803 ORTHO05D001162 2.0e-09 66.2 82 51.2
Peaxi162Scf00000g04014 Petunia axillaris HOM05D000803 ORTHO05D001162 2.7e-09 65.9 81 50.6
Sopen12g007120 Solanum pennellii HOM05D000803 ORTHO05D001162 4.6e-09 65.1 82 53.7
CANSAT56G3897 Cannabis sativa HOM05D000803 ORTHO05D001162 7.8e-09 64.3 81 50.6
AUR62034259 Chenopodium quinoa HOM05D000803 ORTHO05D001162 7.8e-09 64.3 94 50.0
Migut.M00815 Erythranthe guttata HOM05D000803 ORTHO05D001162 7.8e-09 64.3 85 50.6
PGSC0003DMG400015360 Solanum tuberosum HOM05D000803 ORTHO05D001162 7.8e-09 64.3 82 52.4
HanXRQChr03g0078551 Helianthus annuus HOM05D000803 ORTHO05D001162 1.0e-08 63.9 87 56.3
Sc16g0006930 Simmondsia chinensis HOM05D000803 ORTHO05D001162 1.3e-08 63.5 83 51.8
Solyc12g013810.2 Solanum lycopersicum HOM05D000803 ORTHO05D001162 1.3e-08 63.5 81 53.1
Solyc07g063190.3 Solanum lycopersicum HOM05D000803 ORTHO05D001162 2.3e-08 62.8 82 50.0
Nitab4.5_0003688g0090 Nicotiana tabacum HOM05D000803 ORTHO05D001162 3.0e-08 62.4 82 50.0
SalBow7G1844 Salvia bowleyana HOM05D000803 ORTHO05D001162 3.0e-08 62.4 80 47.5
SalBow7G3672 Salvia bowleyana HOM05D000803 ORTHO05D001162 3.0e-08 62.4 80 47.5
TAR629G0153 Trochodendron aralioides HOM05D000803 ORTHO05D001162 3.9e-08 62.0 89 43.8
CAN.G739.6 Capsicum annuum HOM05D000803 ORTHO05D001162 5.0e-08 61.6 83 53.0
FAN16G2378 Fragaria x ananassa HOM05D000803 ORTHO05D001162 6.6e-08 61.2 84 50.0
TAR627G0831 Trochodendron aralioides HOM05D000803 ORTHO05D033915 6.6e-08 61.2 86 47.7
FAN21G2949 Fragaria x ananassa HOM05D000803 ORTHO05D001162 8.6e-08 60.8 83 50.6
Migut.H01932 Erythranthe guttata HOM05D000803 ORTHO05D001162 1.1e-07 60.5 82 54.9
FvH4_3g20140 Fragaria vesca HOM05D000803 ORTHO05D001162 1.1e-07 60.5 83 50.6
Oeu011683.1 Olea europaea HOM05D000803 ORTHO05D001162 1.1e-07 60.5 81 50.6
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 1.1e-07 60.5 81 51.9
Sc07g0002590 Simmondsia chinensis HOM05D000803 ORTHO05D001162 1.5e-07 60.1 85 47.1
FAN25G0768 Fragaria x ananassa HOM05D000803 ORTHO05D001162 2.5e-07 59.3 84 48.8
RcHm_v2.0_Chr5g0033941 Rosa chinensis HOM05D000803 ORTHO05D001162 2.5e-07 59.3 87 47.1
TWI38G0860 Tripterygium wilfordii HOM05D000803 ORTHO05D001162 4.3e-07 58.5 85 44.7
Atru.chr2.2669 Acer truncatum HOM05D000803 ORTHO05D001162 5.6e-07 58.2 86 47.7
SGA_v2.0_scaffold9G04921 Striga asiatica HOM05D000397 ORTHO05D002023 5.6e-07 58.2 79 46.8
MD03G1226200 Malus domestica HOM05D000803 ORTHO05D001162 7.3e-07 57.8 88 45.5
Solyc10g006970.3 Solanum lycopersicum HOM05D000803 ORTHO05D001162 7.3e-07 57.8 95 42.1
EL10Ac4g08149 Beta vulgaris HOM05D000803 ORTHO05D001162 9.5e-07 57.4 84 50.0
Manes.03G111300 Manihot esculenta HOM05D000803 ORTHO05D001162 1.6e-06 56.6 88 45.5
MD11G1244900 Malus domestica HOM05D000803 ORTHO05D001162 2.1e-06 56.2 88 46.6
PGSC0003DMG400025034 Solanum tuberosum HOM05D000803 ORTHO05D001162 2.1e-06 56.2 97 42.3
A05p34050 Brassica napus HOM05D000803 ORTHO05D001162 2.8e-06 55.8 89 40.4
BraA05t22226Z Brassica rapa HOM05D000803 ORTHO05D001162 2.8e-06 55.8 89 40.4
Nitab4.5_0000332g0020 Nicotiana tabacum HOM05D000803 ORTHO05D001162 2.8e-06 55.8 81 50.6
C05p51810 Brassica napus HOM05D000803 ORTHO05D001162 3.6e-06 55.5 89 40.4
CiPaw.12G117500 Carya illinoinensis HOM05D000803 ORTHO05D001162 3.6e-06 55.5 87 46.0
Nn1g06573 Nelumbo nucifera HOM05D000803 ORTHO05D001162 3.6e-06 55.5 83 48.2
Oeu060548.2 Olea europaea HOM05D000803 ORTHO05D001162 3.6e-06 55.5 81 48.1
SGA_v2.0_scaffold73G24271 Striga asiatica HOM05D000803 ORTHO05D001162 3.6e-06 55.5 83 45.8
unitig_21.g20072 Utricularia gibba HOM05D000803 ORTHO05D001162 3.6e-06 55.5 81 45.7
Sopen10g002880 Solanum pennellii HOM05D000803 ORTHO05D001162 6.2e-06 54.7 94 41.5
BcaC05g28978 Brassica carinata HOM05D000803 ORTHO05D001162 8.1e-06 54.3 89 39.3
BolC5t33867H Brassica oleracea HOM05D000803 ORTHO05D001162 8.1e-06 54.3 89 39.3


User provided reference genes

Program Settings