Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042293 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.9e-172 609.0 283 100.0
CSS0003612 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.6e-171 605.9 283 99.3
CSS0035504 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 3.2e-164 581.6 283 94.7
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 2.4e-156 555.4 280 92.5
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 1.5e-150 536.2 280 87.5
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 5.5e-148 527.7 280 86.1
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 3.5e-147 525.0 280 86.1
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 3.5e-147 525.0 280 86.1
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 1.8e-146 522.7 280 85.7
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 1.9e-145 519.2 279 84.9
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 3.7e-144 515.0 280 84.3
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 3.7e-144 515.0 280 83.2
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 1.1e-143 513.5 280 83.6
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 1.2e-142 510.0 280 83.2
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 1.2e-142 510.0 280 83.2
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 1.2e-142 510.0 279 83.9
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 2.0e-142 509.2 280 81.8
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 2.0e-142 509.2 280 82.9
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 3.4e-142 508.4 280 83.9
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 3.4e-142 508.4 280 83.2
Prupe.8G137300 Prunus persica HOM05D003511 ORTHO05D004403 5.8e-142 507.7 280 82.1
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 7.6e-142 507.3 280 83.2
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 1.3e-141 506.5 280 83.6
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 1.7e-141 506.1 280 81.8
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 1.1e-140 503.4 280 82.1
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 1.1e-140 503.4 280 82.5
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 1.4e-140 503.1 280 81.4
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 3.2e-140 501.9 280 81.1
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 3.2e-140 501.9 280 82.1
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 5.5e-140 501.1 280 81.4
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 5.5e-140 501.1 280 82.9
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 1.6e-139 499.6 280 80.7
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 1.6e-139 499.6 280 82.5
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 2.1e-139 499.2 280 81.1
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.7e-139 498.8 280 81.4
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 3.5e-139 498.4 280 81.4
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.6e-139 498.0 280 81.4
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 2.3e-138 495.7 280 81.4
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 2.3e-138 495.7 280 80.7
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 3.0e-138 495.4 280 81.1
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 3.9e-138 495.0 280 79.6
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 3.9e-138 495.0 280 80.7
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 3.9e-138 495.0 280 80.4
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 6.7e-138 494.2 280 79.6
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 6.7e-138 494.2 280 81.1
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 1.1e-137 493.4 280 80.4
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 1.5e-137 493.0 280 79.6
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 2.5e-137 492.3 280 81.1
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 3.3e-137 491.9 280 79.3
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 5.7e-137 491.1 279 79.2
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 7.4e-137 490.7 280 79.3
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 9.7e-137 490.3 280 79.6
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 2.8e-136 488.8 280 80.4
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 4.8e-136 488.0 280 79.3
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 6.3e-136 487.6 280 79.6
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 6.3e-136 487.6 280 78.6
Sabra16G0187700 Salix brachista HOM05D003511 ORTHO05D004403 1.8e-135 486.1 280 79.6
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 3.4e-134 481.9 282 78.7
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.5e-134 481.5 301 75.1
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 7.6e-134 480.7 327 71.3
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 3.8e-133 478.4 280 78.2
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 6.5e-133 477.6 280 77.5
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 8.5e-133 477.2 280 77.5
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 1.4e-132 476.5 280 77.1
vmacro02524 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 1.9e-132 476.1 280 77.1
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 2.5e-132 475.7 280 77.5
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.5e-132 475.7 328 71.0
Sed0017826 Sechium edule HOM05D003511 ORTHO05D004403 2.5e-132 475.7 280 75.7
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 4.2e-132 474.9 280 77.5
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 7.2e-132 474.2 280 78.2
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 9.3e-132 473.8 280 76.1
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 1.2e-131 473.4 280 77.5
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 1.6e-131 473.0 280 77.5
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 1.6e-131 473.0 280 76.1
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 1.6e-131 473.0 280 75.4
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 1.6e-131 473.0 280 77.9
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 2.1e-131 472.6 280 76.1
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 4.6e-131 471.5 280 77.1
SalBow6G6056 Salvia bowleyana HOM05D003511 ORTHO05D004403 4.6e-131 471.5 280 77.9
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 6.1e-131 471.1 280 75.7
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 6.1e-131 471.1 280 75.7
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 7.9e-131 470.7 285 72.3
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.0e-130 470.3 280 75.7
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 1.0e-130 470.3 280 75.7
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 1.3e-130 469.9 280 75.7
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.3e-130 469.9 280 76.8
Rhsim10G0162100 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.3e-130 469.9 282 76.2
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 2.3e-130 469.2 280 76.1
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 2.3e-130 469.2 280 75.7
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 5.1e-130 468.0 280 74.3
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 6.7e-130 467.6 280 75.0
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 8.7e-130 467.2 280 74.6
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 1.5e-129 466.5 280 76.1
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 3.3e-129 465.3 280 76.4
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 4.3e-129 464.9 280 75.7
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 7.4e-129 464.2 280 74.6
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 7.4e-129 464.2 280 75.0
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 7.4e-129 464.2 280 75.0
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 7.4e-129 464.2 280 75.7
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 1.3e-128 463.4 280 74.3
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.3e-128 463.4 280 75.0
AUR62010328 Chenopodium quinoa HOM05D003511 ORTHO05D004403 2.2e-128 462.6 280 74.3
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 2.2e-128 462.6 280 74.3
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 3.7e-128 461.8 280 73.9
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 4.8e-128 461.5 281 73.7
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 6.3e-128 461.1 280 74.6
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 8.2e-128 460.7 280 76.4
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 1.1e-127 460.3 280 73.9
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 2.4e-127 459.1 318 68.2
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 6.9e-127 457.6 280 73.2
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 6.9e-127 457.6 280 73.2
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 6.9e-127 457.6 280 73.2
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 1.2e-126 456.8 280 73.2
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 1.2e-126 456.8 280 74.6
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 2.6e-126 455.7 280 72.9
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 2.6e-126 455.7 280 72.9
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 2.6e-126 455.7 280 72.5
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 5.9e-126 454.5 280 73.2
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 5.9e-126 454.5 280 72.9
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 1.0e-125 453.8 280 75.0
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 1.7e-125 453.0 280 76.1
HPP92_006064 Vanilla planifolia HOM05D003511 ORTHO05D004403 2.2e-125 452.6 280 72.1
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 2.9e-125 452.2 280 72.1
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 3.8e-125 451.8 281 75.8
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 3.8e-125 451.8 280 73.2
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 6.5e-125 451.1 280 73.2
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 1.1e-124 450.3 280 72.9
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 3.2e-124 448.7 280 71.4
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 3.6e-123 445.3 280 72.5
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 6.7e-122 441.0 281 71.5
Potri.001G298900 Populus trichocarpa HOM05D003511 ORTHO05D004403 7.4e-121 437.6 282 71.6
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 1.3e-120 436.8 281 69.4
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 1.3e-120 436.8 281 69.8
Sabra16G0187500 Salix brachista HOM05D003511 ORTHO05D004403 3.7e-120 435.3 281 71.2
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 4.8e-120 434.9 281 69.4
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 8.2e-120 434.1 280 69.3
SEGI_38974 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 5.3e-119 431.4 280 67.9
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 1.7e-117 426.4 269 73.6
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 6.1e-115 417.9 282 67.7
Peaxi162Scf00152g00326 Petunia axillaris HOM05D003511 ORTHO05D004403 8.0e-115 417.5 280 68.9
Medtr4g127370 Medicago truncatula HOM05D003511 ORTHO05D004403 2.8e-112 409.1 266 71.8
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 1.3e-109 400.2 280 67.5
Dinv15773 Davidia involucrata HOM05D003511 ORTHO05D004403 1.7e-109 399.8 215 85.1
MBI16_g09476_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 9.4e-108 394.0 228 80.3
MD10G1099400 Malus domestica HOM05D003511 ORTHO05D004403 5.5e-100 368.2 215 79.1
TPR.G19062 Trifolium pratense HOM05D003511 ORTHO05D004403 3.6e-99 365.5 280 60.7
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 1.4e-98 363.6 280 65.0
Pp3c19_10350 Physcomitrium patens HOM05D003511 ORTHO05D004403 2.6e-97 359.4 282 56.4
Peaxi162Scf00016g02427 Petunia axillaris HOM05D003511 ORTHO05D004403 1.2e-94 350.5 269 63.9
Mapoly0115s0027 Marchantia polymorpha HOM05D003511 ORTHO05D004403 2.0e-94 349.7 283 56.5
Psat6g217200 Pisum sativum HOM05D003511 ORTHO05D004403 7.7e-94 347.8 215 74.0
SMO116G0225 Selaginella moellendorffii HOM05D003511 ORTHO05D004403 3.3e-92 342.4 282 55.0
Zm00001eb027590 Zea mays HOM05D003511 ORTHO05D004403 1.2e-89 334.0 217 69.6
SEGI_24031 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 1.6e-78 297.0 213 63.8
MELO3C019553.2 Cucumis melo HOM05D003511 ORTHO05D004403 3.0e-77 292.7 163 79.8
Sed0023024 Sechium edule HOM05D003511 ORTHO05D004403 6.6e-77 291.6 163 77.9
AagrBONN_evm.TU.Sc2ySwM_344.4246 Anthoceros agrestis HOM05D003511 ORTHO05D004403 2.2e-64 250.0 272 45.2
TAR381G0463 Trochodendron aralioides HOM05D003511 ORTHO05D004403 3.0e-61 239.6 121 86.0
TAR381G0671 Trochodendron aralioides HOM05D003511 ORTHO05D004403 9.9e-57 224.6 121 84.3
Atru.chr5.2448 Acer truncatum HOM05D003511 ORTHO05D004403 1.9e-55 220.3 280 42.9
Ah.01g010970 Amaranthus hybridus HOM05D003511 ORTHO05D004403 1.2e-49 201.1 118 74.6
AagrBONN_evm.TU.Sc2ySwM_344.4259 Anthoceros agrestis HOM05D003511 ORTHO05D004403 2.8e-35 153.3 148 50.7
TPR.G13230 Trifolium pratense HOM05D003511 ORTHO05D004403 1.4e-34 151.0 107 68.2
MBI16_g16349_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 4.5e-25 119.4 53 90.6
MBI16_g33969_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 4.5e-25 119.4 53 90.6
TAR365G0577 Trochodendron aralioides HOM05D003511 ORTHO05D416054 6.3e-19 99.0 78 64.1
TPR.G4920 Trifolium pratense HOM05D000048 ORTHO05D000207 1.7e-16 90.9 64 73.4
Glyma.04G111966 Glycine max HOM05D003511 ORTHO05D004403 2.5e-15 87.0 41 82.9
MD10G1099600 Malus domestica HOM05D003511 ORTHO05D022111 3.9e-13 79.7 39 89.7
Glyma.10G260750 Glycine max HOM05D003511 ORTHO05D004403 4.5e-09 66.2 82 43.9
Rhsim12G0174700 Rhododendron simsii HOM05D003511 ORTHO05D000006 7.7e-09 65.5 54 63.0
Lj5g0016794 Lotus japonicus HOM05D003511 ORTHO05D236221 2.9e-08 63.5 39 66.7
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.5e-08 62.4 46 65.2


User provided reference genes

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