Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1456.4 848 100.0
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1443.7 848 99.3
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1254.2 770 87.9
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1197.6 848 76.2
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1178.7 763 82.4
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1164.8 847 74.6
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1164.1 859 76.8
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1163.7 862 76.8
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1161.0 840 75.7
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1159.4 766 78.6
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1159.1 841 74.9
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1156.0 758 79.3
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1156.0 842 76.7
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1151.3 840 76.1
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1151.3 845 74.4
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1149.4 845 74.0
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1148.7 845 74.4
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1142.5 843 73.7
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1140.9 852 75.5
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1140.6 846 78.0
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1137.5 758 80.1
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1136.3 845 75.0
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1135.9 759 78.5
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1135.9 848 70.6
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1135.9 843 73.2
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1135.6 843 72.0
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1135.2 843 72.5
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1134.8 758 78.4
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1134.4 758 79.7
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1134.0 766 76.9
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1131.7 846 75.4
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1130.2 760 79.5
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1127.1 757 76.5
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1126.7 767 78.4
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1126.7 766 77.5
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1125.9 846 73.9
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1125.9 762 78.2
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1125.5 760 79.3
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1125.5 757 76.6
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1124.8 754 76.3
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1124.4 764 75.7
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1124.0 850 71.9
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1122.1 767 77.6
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1120.5 832 72.7
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1120.5 832 72.7
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1117.8 859 72.9
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1116.3 842 76.6
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1115.5 832 72.6
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1115.1 759 79.1
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1112.8 844 74.5
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1112.8 832 72.4
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1112.8 833 73.1
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1110.1 832 72.2
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1105.5 831 73.0
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 764 75.3
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1103.2 843 76.5
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1100.9 857 73.5
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1099.0 757 76.0
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1098.6 759 75.5
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1098.2 844 71.0
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1095.1 846 75.9
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1095.1 842 75.4
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1093.6 847 72.3
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1090.1 842 71.6
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1089.3 758 75.7
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1085.1 897 68.8
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1083.2 842 71.5
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1079.3 843 71.2
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1079.3 868 67.2
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 0.0e+00 1077.4 834 70.7
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 756 75.5
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 3.4e-310 1068.1 795 73.8
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 2.4e-308 1062.0 757 72.8
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 9.1e-308 1060.1 758 75.7
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 2.8e-304 1048.5 761 72.8
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 4.7e-304 1047.7 760 72.9
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 4.7e-304 1047.7 941 68.4
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 1.1e-300 1036.6 758 71.8
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 2.7e-299 1031.9 758 72.0
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 1.3e-298 1029.6 761 70.4
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 6.6e-298 1027.3 832 69.0
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 8.6e-298 1026.9 914 64.3
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 1.9e-297 1025.8 757 71.9
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 4.3e-297 1024.6 758 71.8
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 5.6e-297 1024.2 757 71.7
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 1.6e-296 1022.7 757 71.2
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 1.6e-296 1022.7 858 65.7
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 2.8e-296 1021.9 733 76.9
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 4.7e-296 1021.1 757 71.2
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 4.7e-296 1021.1 657 79.5
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 8.0e-296 1020.4 757 69.9
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 1.0e-295 1020.0 757 71.1
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 2.3e-295 1018.8 757 71.1
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 6.8e-295 1017.3 757 69.7
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 2.2e-293 1012.3 657 78.8
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 2.9e-293 1011.9 756 70.0
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 7.0e-292 1007.3 675 75.3
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 1.2e-291 1006.5 733 72.0
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 8.9e-287 990.3 642 80.1
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 6.0e-283 977.6 758 70.1
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 1.5e-281 973.0 670 73.1
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 5.2e-279 964.5 765 65.8
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 7.1e-276 954.1 757 64.5
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 3.3e-273 945.3 766 64.5
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 2.4e-271 939.1 568 83.3
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 2.6e-270 935.6 757 68.2
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 1.9e-268 929.5 625 74.9
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 1.2e-259 900.2 755 60.3
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 2.1e-251 872.8 760 58.7
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 3.4e-246 855.5 760 56.8
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 2.4e-239 832.8 760 56.8
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 6.9e-239 831.2 858 58.5
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 3.8e-237 825.5 755 64.9
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 7.4e-225 784.6 771 53.3
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 3.6e-203 712.6 426 84.7
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 1.5e-169 600.9 476 69.3
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.2e-167 593.2 442 73.1
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 2.6e-137 493.8 322 79.2
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 3.2e-127 460.3 739 36.9
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 9.6e-124 448.7 307 73.9
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.9e-120 437.2 269 81.4
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.4e-119 434.9 389 74.8
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 6.1e-118 429.5 763 36.0
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.9e-117 426.8 403 58.8
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 5.3e-98 363.2 383 64.8
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 2.1e-94 351.3 836 31.2
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.3e-93 347.8 249 76.7
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 1.3e-56 225.7 227 57.3
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 3.6e-54 217.6 182 65.9
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 3.7e-51 207.6 125 84.0
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 5.1e-48 197.2 131 71.0
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 6.6e-48 196.8 142 78.2
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 7.8e-41 173.3 160 63.1
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.3e-40 171.8 157 61.8
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 5.1e-40 170.6 157 61.1
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 2.7e-33 148.3 124 66.9
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 1.0e-16 93.2 70 67.1
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 8.7e-16 90.1 77 63.6


User provided reference genes

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