Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042287 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.0e-30 136.0 63 100.0
CSS0035259 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.2e-18 95.9 75 64.0
GSVIVG01010779001 Vitis vinifera HOM05D003336 ORTHO05D003807 2.5e-16 88.2 69 60.9
vmacro00616 Vaccinium macrocarpon HOM05D003336 ORTHO05D003807 9.3e-16 86.3 72 58.3
vmacro00649 Vaccinium macrocarpon HOM05D003336 ORTHO05D003807 9.3e-16 86.3 72 58.3
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 9.3e-16 86.3 68 61.8
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 1.6e-15 85.5 68 60.3
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 2.1e-15 85.1 68 60.3
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 2.1e-15 85.1 68 60.3
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 2.1e-15 85.1 68 58.8
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 2.1e-15 85.1 68 60.3
Peaxi162Scf00108g01317 Petunia axillaris HOM05D003336 ORTHO05D003807 2.1e-15 85.1 71 56.3
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 2.7e-15 84.7 68 58.8
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 2.7e-15 84.7 68 58.8
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 2.7e-15 84.7 68 58.8
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 2.7e-15 84.7 68 58.8
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 2.7e-15 84.7 68 58.8
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 2.7e-15 84.7 68 58.8
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 2.7e-15 84.7 68 58.8
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 2.7e-15 84.7 68 58.8
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 2.7e-15 84.7 68 58.8
Aqoxy1G02652 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 3.6e-15 84.3 68 60.3
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 3.6e-15 84.3 68 60.3
CSS0038429 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.6e-15 84.3 68 60.3
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.6e-15 84.3 68 60.3
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 3.6e-15 84.3 68 60.3
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 3.6e-15 84.3 68 60.3
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 3.6e-15 84.3 68 60.3
Nn1g09612 Nelumbo nucifera HOM05D003336 ORTHO05D003807 3.6e-15 84.3 68 60.3
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 3.6e-15 84.3 68 60.3
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 3.6e-15 84.3 68 58.8
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 3.6e-15 84.3 68 60.3
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Cpa.g.sc9.295 Carica papaya HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 4.6e-15 84.0 61 63.9
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 4.6e-15 84.0 61 63.9
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Lj6C18T11 Lonicera japonica HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 57.4
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 4.6e-15 84.0 68 58.8
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 6.1e-15 83.6 68 58.8
MBI01_g10303_MAGBIO Magnolia biondii HOM05D003336 ORTHO05D003807 6.1e-15 83.6 67 61.2
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 6.1e-15 83.6 68 57.4
Atru.chr6.1044 Acer truncatum HOM05D003336 ORTHO05D003807 7.9e-15 83.2 68 57.4
Actinidia35985 Actinidia chinensis HOM05D003336 ORTHO05D003807 7.9e-15 83.2 67 59.7
Actinidia35987 Actinidia chinensis HOM05D003336 ORTHO05D003807 7.9e-15 83.2 67 59.7
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 7.9e-15 83.2 68 57.4
arahy.Tifrunner.gnm1.ann1.H7WPER Arachis hypogaea HOM05D003336 ORTHO05D003807 7.9e-15 83.2 68 58.8
Cfa013247 Carpinus fangiana HOM05D003336 ORTHO05D003807 7.9e-15 83.2 67 59.7
Ca_10458_v3 Cicer arietinum L. HOM05D003336 ORTHO05D003807 7.9e-15 83.2 67 59.7
Haze_21691 Corylus avellana HOM05D003336 ORTHO05D003807 7.9e-15 83.2 67 59.7
Duzib175G0004 Durio zibethinus HOM05D003336 ORTHO05D003807 7.9e-15 83.2 68 57.4
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 7.9e-15 83.2 68 60.3
Nitab4.5_0000233g0220 Nicotiana tabacum HOM05D003336 ORTHO05D003807 7.9e-15 83.2 67 59.7
Lalb_Chr09g0333021 Lupinus albus HOM05D003336 ORTHO05D003807 1.0e-14 82.8 68 57.4
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 1.3e-14 82.4 68 58.8
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 1.3e-14 82.4 68 58.8
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 1.3e-14 82.4 68 58.8
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 1.3e-14 82.4 68 58.8
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 1.3e-14 82.4 68 58.8
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 1.3e-14 82.4 68 58.8
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 1.3e-14 82.4 68 58.8
SalBow1G0055 Salvia bowleyana HOM05D003336 ORTHO05D003807 1.3e-14 82.4 68 57.4
SalBow1G1314 Salvia bowleyana HOM05D003336 ORTHO05D003807 1.3e-14 82.4 68 57.4
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 1.8e-14 82.0 68 58.8
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 1.8e-14 82.0 68 58.8
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 1.8e-14 82.0 68 58.8
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 1.8e-14 82.0 68 58.8
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 1.8e-14 82.0 68 57.4
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 1.8e-14 82.0 68 58.8
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 1.8e-14 82.0 68 58.8
SEGI_08325 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 1.8e-14 82.0 68 57.4
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 2.3e-14 81.6 68 57.4
Dinv22743 Davidia involucrata HOM05D003336 ORTHO05D003807 2.3e-14 81.6 68 57.4
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 2.3e-14 81.6 68 57.4
Lalb_Chr05g0230051 Lupinus albus HOM05D003336 ORTHO05D003807 2.3e-14 81.6 67 58.2
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 2.3e-14 81.6 67 59.7
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 2.3e-14 81.6 68 57.4
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 3.0e-14 81.3 68 57.4
FvH4_7g04970 Fragaria vesca HOM05D003336 ORTHO05D003807 3.0e-14 81.3 68 57.4
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 3.0e-14 81.3 68 57.4
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 3.0e-14 81.3 68 57.4
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 3.0e-14 81.3 68 57.4
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 3.0e-14 81.3 68 57.4
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 3.0e-14 81.3 68 57.4
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 3.0e-14 81.3 68 57.4
Atru.chr6.1080 Acer truncatum HOM05D003336 ORTHO05D003807 3.9e-14 80.9 68 57.4
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 3.9e-14 80.9 68 57.4
Cc04_g08960 Coffea canephora HOM05D003336 ORTHO05D003807 3.9e-14 80.9 69 55.1
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 3.9e-14 80.9 68 57.4
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 3.9e-14 80.9 68 55.9
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 5.1e-14 80.5 68 57.4
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 5.1e-14 80.5 68 57.4
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 5.1e-14 80.5 68 57.4
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 5.1e-14 80.5 68 57.4
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 8.7e-14 79.7 68 55.9
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 1.1e-13 79.3 67 58.2
DCAR_026317 Daucus carota HOM05D003336 ORTHO05D003807 1.1e-13 79.3 68 55.9
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 1.1e-13 79.3 68 54.4
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 1.5e-13 79.0 68 55.9
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 1.5e-13 79.0 68 57.4
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 2.5e-13 78.2 68 54.4
CDE02G0747 Ceratophyllum demersum HOM05D003336 ORTHO05D003807 7.4e-13 76.6 49 67.3
FAN21G2317 Fragaria x ananassa HOM05D003336 ORTHO05D003807 2.2e-12 75.1 56 58.9
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 2.2e-12 75.1 68 54.4
RcHm_v2.0_Chr1g0329821 Rosa chinensis HOM05D003336 ORTHO05D003807 4.8e-12 73.9 41 78.0
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.3e-12 73.6 45 73.3
FAN17G2067 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.1e-11 72.8 67 55.2
CSS0002456 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.4e-11 71.6 58 62.1
Haze_26283 Corylus avellana HOM05D003336 ORTHO05D003807 3.1e-11 71.2 68 48.5
Migut.O00911 Erythranthe guttata HOM05D003336 ORTHO05D003807 5.3e-11 70.5 40 75.0
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 6.9e-11 70.1 50 60.0
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 9.1e-11 69.7 67 52.2
Lj6C18T3 Lonicera japonica HOM05D003336 ORTHO05D003807 1.5e-10 68.9 48 62.5
CSS0009752 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.0e-09 66.2 57 63.2
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.2e-09 65.1 60 56.7
SEGI_10539 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 2.9e-09 64.7 74 43.2
Cfa023393 Carpinus fangiana HOM05D003336 ORTHO05D003807 1.4e-08 62.4 68 44.1
BcaB07g33710 Brassica carinata HOM05D003336 ORTHO05D003807 3.6e-07 57.8 55 54.5
Sabra07G0105400 Salix brachista HOM05D003336 ORTHO05D000611 3.6e-07 57.8 38 68.4
Sed0015341 Sechium edule HOM05D003336 ORTHO05D003807 3.6e-07 57.8 83 41.0
Nitab4.5_0005460g0060 Nicotiana tabacum HOM05D003336 ORTHO05D003807 4.6e-07 57.4 55 52.7
CSS0005877 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.1e-06 53.9 56 50.0


User provided reference genes

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