Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 2.8e-143 511.9 256 100.0
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.9e-107 392.9 267 73.4
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 7.0e-102 374.4 236 77.5
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.4e-97 360.1 244 74.2
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 3.0e-97 359.0 238 73.1
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 6.8e-97 357.8 237 73.8
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 1.5e-96 356.7 234 73.9
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 3.4e-96 355.5 234 74.4
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 4.4e-96 355.1 243 71.2
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 9.8e-96 354.0 244 73.0
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 9.8e-96 354.0 237 73.8
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 1.7e-95 353.2 225 75.6
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 6.3e-95 351.3 226 75.2
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 6.3e-95 351.3 225 75.1
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 3.1e-94 349.0 232 73.3
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 4.1e-94 348.6 226 73.9
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 2.7e-93 345.9 234 70.9
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 2.7e-93 345.9 225 73.8
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 7.7e-93 344.4 244 69.7
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 7.7e-93 344.4 244 68.0
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 2.3e-92 342.8 226 74.8
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 2.9e-92 342.4 237 70.0
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 2.9e-92 342.4 244 67.6
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 3.8e-92 342.0 226 74.3
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 5.0e-92 341.7 244 68.9
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 5.0e-92 341.7 233 71.2
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 5.0e-92 341.7 226 74.8
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 1.1e-91 340.5 233 71.2
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 1.5e-91 340.1 233 70.8
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 2.5e-91 339.3 238 68.9
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 2.5e-91 339.3 239 72.4
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 3.3e-91 339.0 226 72.1
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 5.5e-91 338.2 244 69.7
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 7.2e-91 337.8 233 70.0
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 9.5e-91 337.4 239 71.1
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 1.6e-90 336.7 232 71.1
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 2.8e-90 335.9 224 70.5
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 8.0e-90 334.3 224 70.1
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 1.4e-89 333.6 232 70.3
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 1.8e-89 333.2 222 71.6
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.8e-89 333.2 243 65.8
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 2.3e-89 332.8 224 71.4
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 4.0e-89 332.0 234 70.9
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 6.8e-89 331.3 243 65.8
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 1.5e-88 330.1 226 69.9
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 2.6e-88 329.3 224 69.2
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 4.4e-88 328.6 243 65.0
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 4.4e-88 328.6 224 69.6
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 9.8e-88 327.4 246 65.9
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 1.7e-87 326.6 242 63.6
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 2.2e-87 326.2 222 70.3
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 2.8e-87 325.9 222 71.2
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 4.9e-87 325.1 250 64.4
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 4.9e-87 325.1 244 64.3
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 8.3e-87 324.3 222 69.8
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.4e-86 323.6 233 69.1
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 1.4e-86 323.6 236 66.1
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 2.4e-86 322.8 230 65.7
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 2.4e-86 322.8 245 64.5
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 7.0e-86 321.2 226 65.9
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 7.0e-86 321.2 228 70.2
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.2e-85 320.5 224 69.6
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 3.5e-85 318.9 223 67.3
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 4.5e-85 318.5 225 68.4
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 5.9e-85 318.2 236 66.5
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 1.0e-84 317.4 225 68.4
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-84 317.0 233 64.4
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-84 317.0 233 64.4
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 1.3e-84 317.0 276 61.6
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 5.0e-84 315.1 227 66.5
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 5.0e-84 315.1 227 66.5
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 5.0e-84 315.1 227 66.5
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 5.0e-84 315.1 227 66.5
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 5.0e-84 315.1 227 66.5
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 6.6e-84 314.7 224 65.6
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 6.6e-84 314.7 227 66.5
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 6.6e-84 314.7 223 69.1
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 1.1e-83 313.9 226 63.3
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 2.5e-83 312.8 243 61.7
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.6e-82 310.1 250 63.6
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 4.0e-81 305.4 236 61.9
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 5.2e-81 305.1 222 68.9
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-79 300.4 227 64.8
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 1.7e-79 300.1 227 64.8
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 8.3e-79 297.7 220 68.6
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 2.4e-78 296.2 244 59.8
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 1.2e-77 293.9 276 59.4
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 7.3e-75 284.6 205 67.8
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 2.8e-74 282.7 222 61.3
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 2.8e-74 282.7 246 55.7
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 5.2e-73 278.5 197 70.1
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.1e-70 270.8 195 69.2
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 2.7e-69 266.2 214 63.1
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 3.0e-68 262.7 190 70.5
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 4.3e-67 258.8 223 56.5
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 1.5e-59 233.8 178 65.7
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 1.4e-57 227.3 224 50.0
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 2.2e-55 219.9 157 67.5
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 1.4e-54 217.2 222 50.5
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 9.2e-54 214.5 226 51.8
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 1.3e-52 210.7 230 51.3
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 5.1e-52 208.8 226 50.0
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 8.1e-50 201.4 218 51.4
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 4.0e-49 199.1 226 47.8
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 6.4e-47 191.8 136 69.9
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 6.0e-45 185.3 194 54.6
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 1.7e-44 183.7 128 71.1
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.9e-43 180.3 158 56.3
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 3.6e-42 176.0 212 43.4
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 6.9e-41 171.8 270 37.4
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 3.4e-40 169.5 199 47.7
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 5.1e-28 129.0 267 34.1
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 3.1e-25 119.8 82 68.3
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 3.4e-24 116.3 172 40.1
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 1.9e-22 110.5 112 53.6
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 7.1e-22 108.6 72 73.6
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 1.8e-20 104.0 63 81.0
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 7.7e-16 88.6 127 43.3
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 9.4e-14 81.6 47 78.7
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 3.0e-12 76.6 62 59.7
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 3.7e-10 69.7 50 68.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 1.8e-09 67.4 49 57.1
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 1.3e-07 61.2 39 69.2
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 2.9e-07 60.1 111 31.5


User provided reference genes

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