Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 3.7e-199 698.0 346 100.0
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 2.2e-159 565.8 292 93.5
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 3.7e-138 495.4 276 84.1
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 2.2e-135 486.1 276 82.6
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 1.2e-133 480.3 273 82.1
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.2e-133 480.3 281 82.6
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 2.1e-133 479.6 285 80.0
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 7.9e-133 477.6 272 81.6
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.8e-132 476.5 352 70.2
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 2.3e-132 476.1 273 82.4
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.9e-131 473.0 281 82.2
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 7.4e-131 471.1 273 81.7
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 9.7e-131 470.7 273 80.6
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 1.3e-130 470.3 283 78.8
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.8e-130 469.2 280 80.4
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 4.8e-130 468.4 292 76.7
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 6.3e-130 468.0 292 76.7
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 8.2e-130 467.6 286 78.0
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 8.2e-130 467.6 292 77.1
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 1.1e-129 467.2 284 77.5
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.1e-129 467.2 280 80.0
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 1.1e-129 467.2 274 79.6
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 1.1e-129 467.2 286 77.6
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 3.1e-129 465.7 283 78.8
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 4.1e-129 465.3 273 79.9
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 5.3e-129 464.9 273 81.0
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 9.1e-129 464.2 286 77.6
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 1.5e-128 463.4 292 76.0
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.5e-128 463.4 283 78.4
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 2.6e-128 462.6 273 79.5
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 5.9e-128 461.5 278 79.9
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 7.7e-128 461.1 286 77.6
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 7.7e-128 461.1 273 79.5
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 1.0e-127 460.7 291 78.0
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 1.7e-127 459.9 273 77.7
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 3.8e-127 458.8 291 74.2
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 5.0e-127 458.4 273 80.2
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 6.5e-127 458.0 321 70.4
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 8.5e-127 457.6 292 76.7
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 1.1e-126 457.2 279 78.1
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 2.5e-126 456.1 348 67.0
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 4.2e-126 455.3 274 79.9
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 9.4e-126 454.1 274 78.1
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 1.6e-125 453.4 273 78.8
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 2.1e-125 453.0 273 79.1
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 3.6e-125 452.2 277 78.0
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 4.7e-125 451.8 297 72.7
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 4.7e-125 451.8 274 78.8
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 3.9e-124 448.7 279 76.3
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 6.7e-124 448.0 273 78.0
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.5e-123 446.8 276 76.1
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 7.4e-123 444.5 276 76.1
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 1.7e-122 443.4 273 75.5
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 2.8e-122 442.6 276 75.7
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 3.7e-122 442.2 304 72.0
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 4.8e-122 441.8 265 80.4
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 8.2e-122 441.0 276 75.4
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 8.2e-122 441.0 273 76.6
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 1.8e-121 439.9 273 77.3
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 5.3e-121 438.3 273 76.2
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 2.6e-120 436.0 276 73.9
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 1.0e-119 434.1 287 73.5
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 1.9e-118 429.9 273 73.6
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 4.2e-118 428.7 293 70.3
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 7.2e-118 427.9 273 73.3
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 1.6e-117 426.8 275 73.1
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 3.6e-117 425.6 288 70.5
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 3.6e-117 425.6 299 69.6
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 6.1e-117 424.9 288 70.5
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 6.1e-117 424.9 288 70.5
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 6.1e-117 424.9 275 72.7
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 2.3e-116 422.9 273 73.3
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 3.9e-116 422.2 293 68.6
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 5.2e-116 421.8 274 74.5
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 5.2e-116 421.8 276 76.1
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.7e-114 416.8 274 74.1
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 2.2e-114 416.4 268 75.7
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 6.3e-114 414.8 273 71.4
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 3.5e-112 409.1 281 70.5
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 5.0e-111 405.2 292 69.9
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 1.5e-110 403.7 274 69.7
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 1.9e-110 403.3 284 69.4
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 1.9e-110 403.3 274 69.3
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 3.2e-110 402.5 273 70.3
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 7.2e-110 401.4 271 69.7
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 9.4e-110 401.0 274 68.6
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 9.4e-110 401.0 286 68.2
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 1.0e-108 397.5 275 69.8
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.8e-108 396.7 266 70.3
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 5.2e-108 395.2 292 67.5
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 6.7e-108 394.8 275 69.5
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 2.6e-107 392.9 275 69.1
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 1.3e-106 390.6 294 64.6
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 1.3e-106 390.6 294 64.6
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 4.1e-105 385.6 233 79.0
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 9.1e-105 384.4 283 64.7
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 1.6e-104 383.6 288 67.4
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 2.0e-104 383.3 225 82.7
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 1.9e-102 376.7 217 83.9
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 4.7e-101 372.1 217 83.4
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 5.2e-100 368.6 283 61.8
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 5.7e-99 365.2 215 80.5
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 7.5e-99 364.8 254 72.8
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 2.2e-98 363.2 215 81.4
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 2.2e-98 363.2 283 64.7
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 1.8e-97 360.1 265 70.6
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.8e-97 360.1 292 63.7
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.6e-96 357.1 238 74.8
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.0e-92 344.4 225 77.3
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 5.7e-91 338.6 184 87.5
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 8.3e-90 334.7 319 55.5
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 8.6e-87 324.7 259 64.5
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 6.8e-84 315.1 226 74.3
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 2.0e-83 313.5 257 61.1
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 2.0e-83 313.5 257 61.1
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 4.6e-80 302.4 217 72.8
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 2.3e-79 300.1 186 79.0
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 4.0e-76 289.3 195 70.3
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 7.5e-75 285.0 154 87.0
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 2.9e-74 283.1 264 53.0
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.3e-71 273.5 153 83.7
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 2.8e-69 266.5 180 70.0
SEGI_33957 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 8.1e-69 265.0 210 63.3
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 1.1e-68 264.6 158 80.4
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 3.2e-33 146.7 90 74.4
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 3.2e-33 146.7 90 74.4
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 3.2e-33 146.7 90 74.4
SMO364G0565 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.0e-31 141.7 202 45.5
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 2.8e-29 133.7 216 41.2
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 1.3e-21 108.2 60 80.0
Sopen03g028940 Solanum pennellii HOM05D005071 ORTHO05D006069 2.8e-21 107.1 69 75.4
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 3.7e-21 106.7 200 36.5
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 3.1e-20 103.6 60 75.0
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 3.1e-20 103.6 60 75.0
Cfa024692 Carpinus fangiana HOM05D005071 ORTHO05D006069 6.1e-16 89.4 207 33.3
Cfa025391 Carpinus fangiana HOM05D005071 ORTHO05D006069 4.8e-13 79.7 198 33.3
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.4e-12 78.2 73 53.4
GSVIVG01012590001 Vitis vinifera HOM05D005071 ORTHO05D006069 1.4e-12 78.2 46 73.9
CiPaw.02G181900 Carya illinoinensis HOM05D005071 ORTHO05D006069 1.8e-12 77.8 47 76.6
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 2.6e-11 73.9 139 34.5
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 5.7e-06 56.2 236 25.8


User provided reference genes

Program Settings