Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 0.0e+00 1087.0 538 100.0
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.5e-231 806.2 538 76.4
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 6.0e-220 767.7 537 72.3
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 8.9e-216 753.8 546 72.2
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 3.2e-213 745.3 549 70.1
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 4.9e-206 721.5 551 68.2
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.4e-205 719.2 545 68.8
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 9.2e-205 717.2 546 68.9
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 2.1e-204 716.1 536 69.4
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 4.7e-201 704.9 545 67.0
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.1e-197 693.7 562 64.9
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.4e-197 693.3 545 65.1
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 3.2e-197 692.2 545 65.0
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 4.2e-197 691.8 552 65.6
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.5e-194 683.3 548 65.3
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.9e-194 682.9 546 65.4
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 5.6e-194 681.4 548 65.3
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.6e-193 679.9 550 65.6
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 3.6e-193 678.7 540 65.9
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 3.6e-193 678.7 545 65.9
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 3.6e-193 678.7 544 65.4
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 2.4e-192 676.0 536 65.5
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.5e-191 673.3 543 65.0
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 5.8e-191 671.4 559 64.0
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.9e-190 669.1 543 65.0
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 4.9e-190 668.3 517 65.8
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 4.9e-190 668.3 545 65.7
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 6.4e-190 667.9 540 64.3
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 8.4e-190 667.5 544 64.0
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 4.2e-189 665.2 545 63.7
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 5.4e-189 664.8 542 64.8
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 9.3e-189 664.1 476 73.3
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 3.5e-188 662.1 538 65.1
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 2.3e-187 659.4 546 64.1
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 3.0e-187 659.1 549 63.9
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 3.9e-187 658.7 546 63.7
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.5e-186 656.0 543 63.9
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 7.3e-186 654.4 549 64.7
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.6e-185 653.3 552 63.0
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 1.1e-184 650.6 560 61.6
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 9.0e-184 647.5 545 62.8
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.5e-183 646.7 547 62.9
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.7e-182 643.3 740 50.1
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 4.9e-182 641.7 532 62.4
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 3.5e-180 635.6 552 61.8
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 3.5e-180 635.6 542 60.7
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.8e-179 633.3 555 60.9
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.9e-179 632.1 560 60.2
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 5.1e-179 631.7 533 61.5
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 8.7e-179 630.9 533 61.5
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 2.5e-178 629.4 533 61.4
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 2.8e-177 625.9 543 61.9
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.8e-177 625.9 548 61.1
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 3.1e-176 622.5 565 60.4
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.5e-175 620.2 541 60.3
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 4.5e-175 618.6 603 56.2
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 1.3e-174 617.1 533 58.9
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 2.9e-174 615.9 556 59.7
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 6.5e-174 614.8 547 59.4
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 8.4e-174 614.4 547 59.4
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.4e-173 613.6 554 60.1
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 3.2e-173 612.5 552 58.5
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 5.5e-173 611.7 550 59.5
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 7.1e-173 611.3 546 59.3
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 2.7e-172 609.4 560 57.9
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 3.5e-172 609.0 552 60.7
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 1.0e-171 607.4 546 59.2
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.0e-171 607.4 560 59.6
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.3e-171 606.3 563 57.7
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 2.3e-171 606.3 555 59.6
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 2.3e-171 606.3 491 65.2
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 6.7e-171 604.7 547 60.0
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 6.7e-171 604.7 541 57.3
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 8.7e-171 604.4 539 60.5
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 8.7e-171 604.4 543 59.3
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 1.1e-170 604.0 556 59.4
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.3e-170 602.1 541 60.6
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 2.8e-169 599.4 562 57.8
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 1.1e-168 597.4 550 58.0
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 1.4e-168 597.0 544 58.6
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 4.0e-168 595.5 543 58.6
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.2e-167 594.0 569 57.1
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 1.2e-167 594.0 557 57.8
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 2.6e-167 592.8 593 53.1
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 2.9e-166 589.3 559 58.3
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 1.1e-165 587.4 548 56.9
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 1.9e-165 586.6 543 59.5
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 2.5e-165 586.3 556 57.9
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 2.3e-163 579.7 626 53.7
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 2.3e-163 579.7 574 54.9
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 3.0e-163 579.3 568 54.4
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 5.1e-163 578.6 552 58.5
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.9e-162 576.6 555 56.4
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 6.3e-161 571.6 450 68.4
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 5.3e-160 568.5 556 56.1
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 6.5e-158 561.6 493 60.2
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.1e-157 560.8 467 60.0
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 3.2e-157 559.3 498 59.0
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 6.1e-156 555.1 535 56.6
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 1.8e-155 553.5 544 56.1
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 1.4e-152 543.9 544 55.9
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 4.5e-151 538.9 547 55.2
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.0e-150 537.7 521 57.4
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.7e-150 537.0 532 52.8
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 4.2e-149 532.3 513 56.5
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 8.8e-147 524.6 469 58.2
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 4.4e-146 522.3 484 57.9
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 2.8e-145 519.6 549 53.4
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 6.3e-145 518.5 549 52.5
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 5.9e-143 511.9 452 62.8
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.0e-142 511.1 479 55.9
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 1.6e-140 503.8 535 52.3
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.6e-138 496.5 551 50.5
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 3.5e-135 486.1 559 48.5
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 2.9e-134 483.0 480 53.1
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 4.0e-131 472.6 490 55.1
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 9.1e-128 461.5 551 49.7
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.5e-122 444.1 551 46.5
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.2e-121 440.3 445 52.6
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 9.1e-120 434.9 537 45.3
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.8e-115 420.6 585 41.9
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.8e-115 420.6 585 41.9
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 4.0e-115 419.5 323 65.3
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.1e-112 411.4 570 41.2
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.8e-108 396.7 585 40.7
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 1.0e-107 394.8 313 64.5
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.8e-106 389.0 532 42.1
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 2.3e-102 377.1 498 44.8
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 3.3e-101 373.2 559 40.4
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.7e-94 350.9 463 48.4
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 4.9e-89 332.8 360 49.2
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 6.0e-79 299.3 388 47.9
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.6e-74 283.9 181 71.8
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 1.3e-73 281.6 465 41.1
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 4.9e-73 279.6 702 30.5
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.9e-73 279.6 612 34.0
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.1e-72 275.8 603 33.7
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 1.5e-69 268.1 167 73.1
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 1.0e-54 218.8 155 72.9
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 1.3e-52 211.8 256 49.2
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 8.2e-52 209.1 188 62.8
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 4.6e-47 193.4 188 50.0
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.6e-42 177.6 274 42.0
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 1.3e-41 175.3 155 61.3
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.6e-39 167.2 169 54.4
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 7.4e-37 159.5 99 68.7
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.3e-36 158.7 150 60.0
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 2.8e-36 157.5 138 60.9
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.6e-31 141.7 149 51.0
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 7.4e-29 132.9 90 71.1
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 2.5e-24 117.9 166 36.7
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 5.5e-24 116.7 180 34.4
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 9.1e-19 99.4 132 48.5
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 1.9e-16 91.7 59 66.1
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 6.1e-15 86.7 102 44.1
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 2.9e-09 67.8 39 74.4
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 6.1e-07 60.1 181 30.4
CBR_g8224 Chara braunii HOM05D004346 ORTHO05D005153 1.4e-06 58.9 162 31.5
Lsat_1_v5_gn_5_25761 Lactuca sativa HOM05D004346 ORTHO05D005153 3.0e-06 57.8 130 32.3


User provided reference genes

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