Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.9e-303 1045.0 529 100.0
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.8e-222 775.4 558 75.1
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 1.3e-198 696.8 563 65.2
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.2e-198 696.0 555 67.7
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 3.5e-196 688.7 553 67.6
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 6.5e-195 684.5 557 67.1
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 8.5e-195 684.1 558 66.5
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.1e-194 683.7 555 66.8
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 3.2e-194 682.2 555 65.4
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 2.3e-192 676.0 564 66.5
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 1.5e-191 673.3 558 64.7
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 2.8e-190 669.1 558 64.5
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 8.2e-190 667.5 556 64.6
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.1e-189 667.2 553 65.1
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.0e-187 660.6 557 64.3
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 9.4e-186 654.1 556 64.0
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 2.1e-185 652.9 557 63.4
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 3.6e-185 652.1 559 63.1
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.1e-185 651.4 568 63.0
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 6.8e-184 647.9 549 65.9
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 3.4e-183 645.6 561 63.1
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 4.4e-183 645.2 567 61.9
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.2e-182 642.9 553 66.4
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 3.7e-182 642.1 560 60.9
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 9.1e-181 637.5 572 60.5
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.2e-180 637.1 568 60.6
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 1.9e-178 629.8 559 62.4
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 2.5e-178 629.4 564 61.2
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 2.3e-176 622.9 564 62.6
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.0e-176 622.5 569 60.6
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 5.2e-176 621.7 566 61.0
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 6.8e-176 621.3 573 59.2
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 8.9e-176 620.9 537 63.7
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.5e-175 620.2 555 60.9
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 2.6e-175 619.4 553 60.9
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.6e-175 619.4 573 58.6
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.7e-175 618.2 555 60.9
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 7.5e-175 617.8 551 63.9
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 9.8e-175 617.5 563 60.6
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.9e-174 615.1 586 57.5
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.4e-173 612.8 561 60.8
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.4e-173 612.8 561 60.8
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 5.4e-173 611.7 568 58.8
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 9.2e-173 610.9 557 59.6
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.0e-171 607.4 565 59.1
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 5.0e-171 605.1 553 60.4
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 2.5e-170 602.8 556 60.8
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 7.3e-170 601.3 570 58.2
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 9.5e-170 600.9 566 57.6
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.8e-168 596.7 553 60.0
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 3.0e-168 595.9 570 57.9
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 3.7e-166 589.0 551 59.2
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 1.8e-165 586.6 533 61.5
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.8e-165 586.6 494 64.0
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 3.2e-165 585.9 533 61.5
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 9.2e-165 584.3 551 58.8
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 3.5e-164 582.4 561 60.2
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-163 580.9 552 58.9
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 1.0e-163 580.9 558 59.9
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.3e-163 580.5 567 56.3
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 2.5e-162 576.2 577 57.5
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 2.5e-162 576.2 569 58.0
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 3.3e-162 575.9 576 57.6
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 5.6e-162 575.1 574 56.8
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 9.5e-162 574.3 577 57.7
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 2.1e-161 573.2 577 57.2
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 2.1e-161 573.2 579 57.2
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 2.1e-161 573.2 579 57.2
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.8e-161 572.8 577 57.5
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.8e-160 570.1 575 55.8
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.2e-159 567.4 565 55.6
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 4.4e-159 565.5 440 69.3
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 9.8e-159 564.3 561 57.0
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.7e-158 563.5 579 56.5
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 8.3e-158 561.2 559 57.1
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 7.0e-157 558.1 575 56.5
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 3.9e-155 552.4 581 54.7
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 8.6e-155 551.2 576 55.6
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.1e-154 550.8 557 56.0
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 4.3e-154 548.9 558 56.5
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 6.2e-153 545.0 559 56.0
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 8.1e-153 544.7 568 54.8
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 3.1e-152 542.7 576 55.9
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 3.1e-152 542.7 575 55.8
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 5.2e-152 542.0 558 56.3
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 5.2e-152 542.0 558 55.2
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 8.9e-152 541.2 564 53.9
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 2.6e-151 539.7 558 56.1
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 2.6e-151 539.7 559 55.3
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.4e-151 538.9 475 61.3
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 4.4e-151 538.9 556 55.0
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 5.8e-151 538.5 556 54.9
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 2.9e-150 536.2 553 54.6
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 3.7e-150 535.8 563 53.6
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 4.9e-150 535.4 566 54.2
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 6.4e-150 535.0 560 54.1
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 9.2e-149 531.2 572 53.5
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.2e-148 530.8 557 53.1
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 1.6e-148 530.4 559 54.6
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 1.1e-146 524.2 568 54.6
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 2.5e-146 523.1 456 64.5
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 1.8e-144 516.9 535 58.3
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 8.9e-144 514.6 554 54.5
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 7.6e-143 511.5 574 53.7
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.3e-142 510.8 558 54.1
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.9e-142 508.8 410 65.4
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 1.9e-141 506.9 554 51.8
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 1.2e-140 504.2 446 59.2
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 3.3e-138 496.1 577 51.1
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.6e-138 495.4 561 52.4
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 1.1e-136 491.1 532 54.9
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 4.0e-136 489.2 569 49.9
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 9.3e-133 478.0 568 48.9
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.1e-132 476.9 559 51.5
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 3.3e-130 469.5 560 50.7
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 2.4e-128 463.4 583 47.5
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 3.1e-128 463.0 564 49.6
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 4.5e-127 459.1 315 73.0
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 4.9e-126 455.7 405 60.2
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.0e-123 448.0 562 49.8
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.3e-123 447.6 537 46.9
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 4.8e-121 439.1 388 59.8
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 7.1e-117 425.2 559 46.2
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 9.0e-112 408.3 285 71.2
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 2.2e-102 377.1 495 48.7
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 2.6e-95 353.6 404 52.0
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.6e-92 344.4 334 61.4
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.1e-88 331.6 460 39.6
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.6e-74 283.9 309 53.4
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 5.3e-72 276.2 412 37.6
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.9e-69 267.7 510 39.2
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 1.4e-64 251.5 141 83.0
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.5e-63 246.5 210 59.0
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.9e-61 241.1 139 80.6
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 2.8e-57 227.3 208 63.5
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.4e-56 224.2 345 43.2
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.0e-55 221.1 361 41.0
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 8.3e-49 199.1 291 47.4
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.7e-41 174.9 298 43.3
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 2.1e-39 167.9 204 46.1
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.5e-37 161.8 193 52.3
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.5e-26 125.2 76 76.3
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-25 122.1 76 75.0
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 2.7e-23 114.4 69 75.4
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 7.8e-23 112.8 69 73.9
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-22 112.5 69 73.9
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 7.6e-18 96.3 99 52.5
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 8.4e-17 92.8 63 66.7
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 5.1e-14 83.6 363 23.1
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 6.6e-14 83.2 122 44.3
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.6e-12 77.4 165 35.2
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 1.1e-08 65.9 57 57.9
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.5e-07 60.8 58 55.2
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-06 59.3 35 80.0
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.8e-06 58.5 137 27.0


User provided reference genes

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