Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 7.2e-174 614.0 353 100.0
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 5.4e-129 464.9 349 75.6
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 5.6e-126 454.9 362 72.7
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 1.6e-117 426.8 380 67.9
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.6e-115 419.5 280 82.9
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 3.3e-110 402.5 372 65.9
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 5.8e-107 391.7 346 65.0
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 3.8e-106 389.0 357 65.0
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 3.8e-106 389.0 348 67.0
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.9e-105 386.7 342 65.8
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.6e-104 383.6 357 64.4
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.0e-104 381.7 342 65.5
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 1.8e-103 380.2 342 64.0
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 2.5e-102 376.3 383 59.3
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 3.3e-102 375.9 355 62.5
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 9.6e-102 374.4 325 67.7
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.6e-101 373.6 355 62.5
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.4e-100 370.5 331 65.0
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 3.1e-100 369.4 398 58.5
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 4.0e-100 369.0 331 65.3
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.0e-99 366.7 340 64.1
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.4e-99 365.9 332 64.5
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 7.6e-99 364.8 277 72.6
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.8e-98 362.5 338 63.9
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 3.8e-98 362.5 349 63.3
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.1e-97 360.9 340 64.1
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 7.9e-96 354.8 337 62.6
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 3.0e-95 352.8 351 61.8
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 6.7e-95 351.7 327 64.2
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 8.7e-95 351.3 331 62.8
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 1.5e-94 350.5 325 63.7
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 2.5e-94 349.7 376 57.7
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.7e-94 348.6 325 63.1
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 1.3e-93 347.4 330 65.2
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.8e-92 343.6 322 63.4
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 3.1e-92 342.8 346 59.2
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 6.9e-92 341.7 329 62.6
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.5e-91 340.5 343 60.3
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 4.5e-91 339.0 317 62.5
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 1.7e-90 337.0 347 58.5
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 3.8e-90 335.9 321 61.4
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 1.4e-89 334.0 346 58.1
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 2.5e-89 333.2 339 59.0
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.5e-89 333.2 281 67.3
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 2.5e-89 333.2 312 63.5
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 2.1e-88 330.1 345 58.3
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 4.6e-88 328.9 323 60.1
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.0e-87 327.8 331 58.9
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.0e-87 327.8 359 56.5
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.3e-87 326.6 312 61.5
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 3.0e-87 326.2 321 59.8
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 3.9e-87 325.9 323 59.8
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 5.1e-87 325.5 333 58.9
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 8.7e-87 324.7 334 57.2
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 1.1e-86 324.3 344 57.6
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 1.9e-86 323.6 344 56.4
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 2.5e-86 323.2 322 59.3
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 3.3e-86 322.8 350 60.0
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 4.3e-86 322.4 344 57.3
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 4.3e-86 322.4 343 57.1
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 4.3e-86 322.4 336 58.3
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.3e-86 322.4 336 58.3
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 4.3e-86 322.4 345 58.8
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.6e-85 320.5 333 59.2
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 2.2e-85 320.1 344 56.4
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 2.2e-85 320.1 344 56.4
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 8.2e-85 318.2 311 60.8
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.1e-84 317.8 325 59.1
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.8e-84 317.0 282 66.3
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 4.1e-84 315.8 344 57.3
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 6.9e-84 315.1 331 56.8
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 9.1e-84 314.7 334 56.0
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.5e-83 313.9 312 59.9
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.5e-83 313.9 350 57.1
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 1.0e-82 311.2 362 54.4
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 2.2e-82 310.1 355 57.7
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.9e-82 309.7 351 55.8
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 8.5e-82 308.1 330 57.9
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.9e-81 307.0 350 55.7
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.2e-81 306.2 333 56.5
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.2e-80 304.3 327 55.4
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 4.6e-80 302.4 332 57.2
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 4.6e-80 302.4 337 53.7
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.6e-78 296.6 327 54.4
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 4.4e-78 295.8 362 52.5
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 1.7e-77 293.9 348 54.3
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 3.7e-77 292.7 361 52.1
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 4.8e-77 292.4 327 56.0
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.1e-76 291.2 294 58.5
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 5.3e-76 288.9 284 61.6
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 6.9e-76 288.5 317 55.8
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 4.5e-75 285.8 349 51.0
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 5.9e-75 285.4 346 53.2
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 7.7e-75 285.0 344 52.3
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.3e-74 284.3 361 48.5
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.7e-74 283.9 327 53.5
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.2e-74 283.5 280 60.7
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 2.9e-74 283.1 356 53.7
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 3.8e-74 282.7 320 55.9
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.2e-73 279.6 355 51.0
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 5.5e-73 278.9 301 55.1
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 7.2e-73 278.5 278 61.9
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 7.2e-73 278.5 278 61.9
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 3.9e-71 272.7 359 50.1
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 8.8e-71 271.6 369 47.7
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.6e-70 270.0 283 59.4
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 3.3e-70 269.6 319 53.0
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 5.7e-70 268.9 370 54.1
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 5.7e-70 268.9 345 51.9
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 9.7e-70 268.1 341 51.0
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 2.8e-69 266.5 330 50.0
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.4e-68 264.2 231 66.2
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 2.4e-68 263.5 308 53.6
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 7.0e-68 261.9 343 49.9
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 3.5e-67 259.6 319 51.7
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 7.7e-67 258.5 312 52.6
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 1.0e-66 258.1 348 50.0
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 8.5e-66 255.0 278 57.6
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 8.5e-66 255.0 305 53.4
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 4.2e-65 252.7 343 49.3
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 6.1e-64 248.8 364 47.8
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 7.5e-62 241.9 228 65.8
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.3e-61 241.1 228 65.4
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 2.8e-61 240.0 345 49.9
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 4.8e-61 239.2 194 69.1
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.8e-60 237.3 324 48.1
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 1.2e-59 234.6 335 48.4
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 5.9e-59 232.3 334 47.3
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 1.7e-58 230.7 354 44.6
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 2.7e-56 223.4 299 49.5
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 8.0e-56 221.9 153 76.5
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 8.3e-53 211.8 212 59.0
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 1.8e-52 210.7 189 69.3
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 1.2e-51 208.0 298 46.0
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 6.1e-48 195.7 359 40.9
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.2e-46 191.4 278 44.2
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 2.6e-46 190.3 332 41.6
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.3e-45 188.0 245 46.9
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.7e-45 187.6 226 44.2
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 5.4e-44 182.6 319 42.6
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.7e-42 177.6 293 44.7
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 5.0e-42 176.0 323 39.9
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.9e-41 174.1 274 45.6
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 1.0e-39 168.3 284 39.1
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 1.4e-36 157.9 118 70.3
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.6e-35 154.5 118 66.9
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.0e-34 151.8 190 50.5
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.2e-32 144.8 244 37.7
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 8.0e-32 142.1 122 69.7
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 3.4e-30 136.7 257 38.9
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.4e-28 131.3 187 48.1
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 6.6e-26 122.5 135 57.0
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.5e-25 121.3 306 36.9
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 8.1e-24 115.5 305 31.1
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 2.0e-22 110.9 82 70.7
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 5.8e-22 109.4 194 37.6
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 9.9e-22 108.6 289 35.6
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 6.4e-21 105.9 97 60.8
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 6.0e-19 99.4 193 34.2
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.0e-18 98.6 73 72.6
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 3.0e-18 97.1 91 56.0
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.6e-18 95.5 102 53.9
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 1.6e-16 91.3 175 40.6
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 4.7e-16 89.7 76 71.1
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.4e-15 87.4 108 48.1
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 2.4e-15 87.4 93 54.8
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 4.0e-15 86.7 206 35.9
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 5.2e-15 86.3 57 71.9
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 6.0e-11 72.8 70 64.3
Gohir.D02G151450 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.0e-10 72.0 101 45.5
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.0e-10 72.0 129 41.9
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 1.7e-10 71.2 112 42.9
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 1.9e-09 67.8 287 25.8
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 7.3e-09 65.9 97 50.5
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 9.0e-07 58.9 107 43.9
MBI18_g25927_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 9.0e-07 58.9 120 43.3
MBI19_g10807_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 2.6e-06 57.4 66 57.6


User provided reference genes

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