Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042158 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 1.6e-51 206.1 124 100.0
CSS0041168 Camellia sinensis var. sinensis HOM05D001602 ORTHO05D001470 1.8e-50 202.6 103 99.0
Actinidia34680 Actinidia chinensis HOM05D001602 ORTHO05D001470 6.1e-19 97.8 65 80.0
Lj2g0019069 Lotus japonicus HOM05D001602 ORTHO05D001470 6.8e-18 94.4 69 72.5
Haze_18406 Corylus avellana HOM05D000219 ORTHO05D000226 1.5e-17 93.2 69 73.9
Gohir.D12G086700 Gossypium hirsutum HOM05D001602 ORTHO05D001470 2.0e-17 92.8 70 71.4
Gorai.008G096900 Gossypium raimondii HOM05D001602 ORTHO05D001470 2.0e-17 92.8 70 71.4
CiPaw.15G107800 Carya illinoinensis HOM05D001602 ORTHO05D001470 2.6e-17 92.4 70 70.0
Lalb_Chr22g0354061 Lupinus albus HOM05D001602 ORTHO05D001470 4.4e-17 91.7 74 63.5
TPR.G31348 Trifolium pratense HOM05D001602 ORTHO05D001470 4.4e-17 91.7 69 71.0
COL.COLO4_12119 Corchorus olitorius HOM05D001552 ORTHO05D003294 7.5e-17 90.9 67 73.1
Duzib248G1501 Durio zibethinus HOM05D001602 ORTHO05D001470 7.5e-17 90.9 70 68.6
Glyma.16G128200 Glycine max HOM05D001602 ORTHO05D001470 7.5e-17 90.9 69 69.6
Potri.017G153900 Populus trichocarpa HOM05D001602 ORTHO05D001470 7.5e-17 90.9 69 69.6
Sabra17G0126100 Salix brachista HOM05D001602 ORTHO05D001470 7.5e-17 90.9 69 68.1
Medtr6g068940 Medicago truncatula HOM05D001602 ORTHO05D001470 9.8e-17 90.5 69 69.6
Phvul.004G136600 Phaseolus vulgaris HOM05D001602 ORTHO05D001470 9.8e-17 90.5 69 69.6
QL10p033772 Quercus lobata HOM05D001602 ORTHO05D001470 9.8e-17 90.5 73 69.9
Dinv11736 Davidia involucrata HOM05D001602 ORTHO05D001470 1.3e-16 90.1 81 64.2
Gohir.A12G088350 Gossypium hirsutum HOM05D001602 ORTHO05D001470 1.3e-16 90.1 70 70.0
Peaxi162Scf00075g01540 Petunia axillaris HOM05D001602 ORTHO05D001470 1.3e-16 90.1 67 67.2
Solyc08g014040.3 Solanum lycopersicum HOM05D001602 ORTHO05D001470 1.3e-16 90.1 71 63.4
Sopen08g004920 Solanum pennellii HOM05D001602 ORTHO05D001470 1.3e-16 90.1 71 63.4
arahy.Tifrunner.gnm1.ann1.IXI1D4 Arachis hypogaea HOM05D001602 ORTHO05D001470 1.7e-16 89.7 72 63.9
arahy.Tifrunner.gnm1.ann1.PY9KME Arachis hypogaea HOM05D001602 ORTHO05D001470 1.7e-16 89.7 72 63.9
arahy.Tifrunner.gnm1.ann1.W1MG13 Arachis hypogaea HOM05D001602 ORTHO05D001470 1.7e-16 89.7 72 63.9
PGSC0003DMG400014616 Solanum tuberosum HOM05D001602 ORTHO05D001470 1.7e-16 89.7 71 63.4
Ciclev10024563m.g Citrus clementina HOM05D001602 ORTHO05D001470 3.7e-16 88.6 73 64.4
Glyma.03G073748 Glycine max HOM05D001602 ORTHO05D001470 3.7e-16 88.6 69 68.1
TWI81G0762 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 3.7e-16 88.6 73 64.4
CAN.G466.9 Capsicum annuum HOM05D001602 ORTHO05D001470 6.3e-16 87.8 71 62.0
Manes.02G226200 Manihot esculenta HOM05D001602 ORTHO05D001470 6.3e-16 87.8 69 66.7
Cpa.g.sc168.17 Carica papaya HOM05D001602 ORTHO05D001470 8.3e-16 87.4 72 63.9
Ca_25281_v3 Cicer arietinum L. HOM05D001602 ORTHO05D001470 8.3e-16 87.4 69 66.7
Cc00_g15860 Coffea canephora HOM05D001602 ORTHO05D001470 1.1e-15 87.0 70 64.3
Nitab4.5_0000242g0140 Nicotiana tabacum HOM05D001602 ORTHO05D001470 1.1e-15 87.0 71 62.0
Thecc.01G143100 Theobroma cacao HOM05D001602 ORTHO05D001470 1.1e-15 87.0 70 68.6
VMungo0464G1375 Vigna mungo HOM05D001602 ORTHO05D001470 1.1e-15 87.0 65 70.8
Atru.chr2.263 Acer truncatum HOM05D001602 ORTHO05D001470 4.1e-15 85.1 77 61.0
Hma1.2p1_0816F.1_g223000 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 5.4e-15 84.7 67 64.2
Psat1g018240 Pisum sativum HOM05D001602 ORTHO05D001470 5.4e-15 84.7 69 66.7
HanXRQChr03g0089261 Helianthus annuus HOM05D001602 ORTHO05D001470 7.0e-15 84.3 71 63.4
Lsat_1_v5_gn_3_109781 Lactuca sativa HOM05D001602 ORTHO05D001470 7.0e-15 84.3 67 67.2
Oeu027750.2 Olea europaea HOM05D001602 ORTHO05D001470 1.6e-14 83.2 68 66.2
Hund22357 Selenicereus undatus HOM05D001602 ORTHO05D001470 1.6e-14 83.2 67 65.7
Eucgr.K02332 Eucalyptus grandis HOM05D001602 ORTHO05D001470 3.5e-14 82.0 79 57.0
SalBow2G2154 Salvia bowleyana HOM05D001602 ORTHO05D001470 5.9e-14 81.3 71 62.0
TAR636G0341 Trochodendron aralioides HOM05D000219 ORTHO05D000226 7.7e-14 80.9 67 62.7
vmacro17754 Vaccinium macrocarpon HOM05D001602 ORTHO05D001470 1.0e-13 80.5 81 56.8
MD06G1241200 Malus domestica HOM05D001602 ORTHO05D001470 1.3e-13 80.1 83 54.2
RcHm_v2.0_Chr7g0176921 Rosa chinensis HOM05D001602 ORTHO05D001470 1.3e-13 80.1 85 52.9
Prupe.5G245300 Prunus persica HOM05D001602 ORTHO05D001470 2.2e-13 79.3 55 69.1
Rhsim08G0125500 Rhododendron simsii HOM05D001602 ORTHO05D001470 2.2e-13 79.3 82 57.3
FvH4_5g18590 Fragaria vesca HOM05D001602 ORTHO05D001470 6.5e-13 77.8 77 55.8
PGR044G0265 Punica granatum HOM05D001602 ORTHO05D001470 6.5e-13 77.8 77 55.8
Sc10g0008650 Simmondsia chinensis HOM05D001602 ORTHO05D001470 6.5e-13 77.8 63 65.1
FAN04G0471 Fragaria x ananassa HOM05D001602 ORTHO05D001470 8.5e-13 77.4 79 54.4
Migut.G01316 Erythranthe guttata HOM05D001602 ORTHO05D001470 1.1e-12 77.0 67 62.7
FAN13G1167 Fragaria x ananassa HOM05D001602 ORTHO05D001470 3.2e-12 75.5 83 51.8
Ah.02g126730 Amaranthus hybridus HOM05D001602 ORTHO05D001470 4.2e-12 75.1 77 54.5
FAN18G2659 Fragaria x ananassa HOM05D000219 ORTHO05D000226 4.2e-12 75.1 79 53.2
MSTRG.4296 Avicennia marina HOM05D001602 ORTHO05D001470 5.5e-12 74.7 71 56.3
SGA_v2.0_scaffold17G08162 Striga asiatica HOM05D001602 ORTHO05D001470 5.5e-12 74.7 77 54.5
Cc00_g15870 Coffea canephora HOM05D001602 ORTHO05D001470 7.2e-12 74.3 59 62.7
GSVIVG01024244001 Vitis vinifera HOM05D001602 ORTHO05D001470 3.6e-11 72.0 69 58.0
ATR0124G013 Amborella trichopoda HOM05D001602 ORTHO05D001470 4.7e-11 71.6 79 50.6
CANSAT11G0022 Cannabis sativa HOM05D001602 ORTHO05D001470 4.7e-11 71.6 76 53.9
THA.LOC104811422 Tarenaya hassleriana HOM05D001602 ORTHO05D001470 1.0e-10 70.5 53 66.0
EL10Ac4g09667 Beta vulgaris HOM05D001602 ORTHO05D001470 1.8e-10 69.7 67 56.7
MBI03_g11897_MAGBIO Magnolia biondii HOM05D001602 ORTHO05D001470 1.8e-10 69.7 68 55.9
Zm00001eb295360 Zea mays HOM05D001602 ORTHO05D001470 4.0e-10 68.6 72 54.2
CDE07G0357 Ceratophyllum demersum HOM05D001602 ORTHO05D001470 5.2e-10 68.2 67 56.7
Os06g0101100 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 6.8e-10 67.8 69 52.2
Thhalv10018937m.g Eutrema salsugineum HOM05D001602 ORTHO05D001470 8.8e-10 67.4 52 65.4
AL2G33080 Arabidopsis lyrata HOM05D001602 ORTHO05D001470 2.0e-09 66.2 51 64.7
BcaC08g45650 Brassica carinata HOM05D001602 ORTHO05D001470 2.0e-09 66.2 51 64.7
A07p29850 Brassica napus HOM05D001602 ORTHO05D001470 2.0e-09 66.2 51 64.7
C06p34070 Brassica napus HOM05D001602 ORTHO05D001470 2.0e-09 66.2 51 64.7
BolC6t38522H Brassica oleracea HOM05D001602 ORTHO05D001470 2.0e-09 66.2 51 64.7
BraA07t30623Z Brassica rapa HOM05D000058 ORTHO05D000255 2.0e-09 66.2 51 64.7
BcaB03g15706 Brassica carinata HOM05D001602 ORTHO05D001470 2.6e-09 65.9 64 54.7
Sp5g28250 Schrenkiella parvula HOM05D001602 ORTHO05D001470 2.6e-09 65.9 55 60.0
AagrBONN_evm.TU.Sc2ySwM_362.258 Anthoceros agrestis HOM05D001602 ORTHO05D001470 3.4e-09 65.5 63 52.4
AT1G73320 Arabidopsis thaliana HOM05D001602 ORTHO05D001470 5.7e-09 64.7 51 62.7
CARHR066370 Cardamine hirsuta HOM05D001602 ORTHO05D001470 5.7e-09 64.7 52 61.5
DCAR_005441 Daucus carota HOM05D001602 ORTHO05D001470 5.7e-09 64.7 67 52.2
AUR62038565 Chenopodium quinoa HOM05D001602 ORTHO05D001470 7.5e-09 64.3 47 68.1
AUR62042010 Chenopodium quinoa HOM05D001602 ORTHO05D001470 7.5e-09 64.3 47 68.1
Carub.0002s2007 Capsella rubella HOM05D001602 ORTHO05D001470 9.8e-09 63.9 51 60.8
PSO063G2222 Papaver somniferum HOM05D001602 ORTHO05D001470 1.3e-08 63.5 67 52.2
PSO782G0075 Papaver somniferum HOM05D001602 ORTHO05D001470 1.3e-08 63.5 67 52.2
Nn3g18545 Nelumbo nucifera HOM05D001602 ORTHO05D001470 3.7e-08 62.0 60 55.0
Aa31LG4G3580 Aethionema arabicum HOM05D001602 ORTHO05D001470 4.9e-08 61.6 43 69.8
Aqoxy2G00391 Aquilegia oxysepala HOM05D001602 ORTHO05D001470 6.3e-08 61.2 67 50.7
AagrBONN_evm.TU.Sc2ySwM_362.616 Anthoceros agrestis HOM05D001602 ORTHO05D001470 1.1e-07 60.5 47 61.7
SEGI_26569 Sequoiadendron giganteum HOM05D001602 ORTHO05D001470 1.4e-07 60.1 50 58.0
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 7.0e-07 57.8 65 44.6
HPP92_021095 Vanilla planifolia HOM05D001602 ORTHO05D001470 1.6e-06 56.6 67 44.8


User provided reference genes

Program Settings