Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.1e-173 613.2 317 100.0
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 7.5e-130 467.6 318 76.4
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 2.3e-126 456.1 274 83.9
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 8.0e-124 447.6 281 79.7
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.5e-122 443.4 301 75.4
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 1.4e-120 436.8 272 80.1
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.2e-120 435.6 241 90.9
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 2.3e-118 429.5 261 81.2
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 3.9e-118 428.7 274 77.0
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.1e-117 427.2 281 77.6
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.1e-117 427.2 281 77.6
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.5e-117 426.8 274 79.2
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.5e-117 426.8 295 74.9
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.9e-117 426.4 264 80.7
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 5.6e-117 424.9 301 72.8
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 2.8e-116 422.5 276 76.1
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 2.8e-116 422.5 294 73.5
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 6.2e-116 421.4 301 72.1
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 6.2e-116 421.4 272 77.9
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 6.2e-116 421.4 301 73.4
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 1.1e-115 420.6 259 81.1
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 3.1e-115 419.1 272 77.6
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 5.2e-115 418.3 281 76.2
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 8.9e-115 417.5 353 64.3
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 3.4e-114 415.6 295 71.9
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 9.8e-114 414.1 265 76.6
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 2.9e-113 412.5 303 70.6
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 3.7e-113 412.1 271 76.8
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 3.7e-113 412.1 294 72.4
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 1.1e-112 410.6 281 75.1
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 1.4e-112 410.2 268 77.6
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.9e-112 409.8 276 74.3
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 1.9e-112 409.8 296 70.6
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 2.4e-112 409.5 294 71.8
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 3.2e-112 409.1 294 72.1
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 3.2e-112 409.1 288 72.9
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 4.1e-112 408.7 270 75.6
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 5.4e-112 408.3 279 74.9
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 7.1e-112 407.9 305 69.5
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 7.1e-112 407.9 289 72.7
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.2e-111 407.1 271 75.6
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.6e-111 406.8 277 74.0
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 2.1e-111 406.4 290 71.0
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 2.7e-111 406.0 276 73.2
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 2.7e-111 406.0 300 69.0
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 2.7e-111 406.0 292 69.5
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 3.5e-111 405.6 304 70.4
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 4.6e-111 405.2 276 74.3
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 7.8e-111 404.4 264 76.5
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 1.0e-110 404.1 291 72.2
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.0e-110 404.1 285 72.6
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.3e-110 403.7 290 71.7
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 3.9e-110 402.1 304 69.7
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 3.9e-110 402.1 297 69.7
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 3.9e-110 402.1 298 70.1
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 5.1e-110 401.7 319 66.8
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 6.6e-110 401.4 298 70.1
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.1e-109 400.6 270 75.2
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 4.3e-109 398.7 271 75.3
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 9.5e-109 397.5 277 74.0
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 3.6e-108 395.6 267 76.0
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 8.1e-108 394.4 267 73.8
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 3.1e-107 392.5 302 68.2
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 8.9e-107 391.0 294 67.7
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 7.6e-106 387.9 280 69.6
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 1.7e-105 386.7 263 72.2
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 1.7e-105 386.7 270 72.2
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 2.2e-105 386.3 293 67.2
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 3.2e-104 382.5 280 68.2
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 3.2e-104 382.5 231 81.0
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 9.2e-104 380.9 279 71.0
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 9.2e-104 380.9 279 71.0
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 1.2e-103 380.6 275 72.0
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 1.2e-103 380.6 273 70.3
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.2e-103 380.6 273 70.3
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.6e-103 380.2 274 70.1
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 2.1e-103 379.8 320 63.1
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 4.6e-103 378.6 274 69.7
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 7.8e-103 377.9 287 66.2
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.0e-102 377.5 268 70.5
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 1.3e-102 377.1 271 69.0
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 1.3e-102 377.1 333 60.4
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 3.0e-102 375.9 232 81.0
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 3.0e-102 375.9 290 65.5
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 6.6e-102 374.8 268 71.6
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.5e-101 373.6 277 69.3
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 2.5e-101 372.9 284 68.7
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 5.6e-101 371.7 237 78.1
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 2.8e-100 369.4 318 62.9
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 5.2e-99 365.2 280 65.7
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 6.9e-99 364.8 266 68.8
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 1.2e-98 364.0 386 54.4
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 3.4e-98 362.5 233 76.4
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 5.4e-96 355.1 309 62.8
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 1.1e-88 330.9 263 64.6
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 2.4e-88 329.7 252 64.7
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 7.9e-87 324.7 262 64.1
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.0e-86 324.3 242 70.7
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 1.0e-86 324.3 256 62.9
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 5.6e-85 318.5 244 68.4
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 4.0e-83 312.4 228 72.4
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 6.9e-83 311.6 258 60.5
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.7e-81 307.0 194 77.8
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 5.3e-75 285.4 201 69.7
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 9.0e-75 284.6 217 68.2
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 7.6e-74 281.6 202 72.3
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 1.9e-69 266.9 203 69.0
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 6.3e-68 261.9 222 61.7
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.6e-63 247.3 185 69.7
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-62 243.8 157 75.8
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 3.9e-62 242.7 173 72.3
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 7.4e-61 238.4 177 70.6
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 2.4e-59 233.4 196 61.2
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 1.4e-51 207.6 130 77.7
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 1.7e-49 200.7 171 64.3
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.9e-48 197.2 171 63.2
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.2e-47 194.5 129 72.1
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.9e-46 189.5 157 65.0
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-45 187.2 226 49.6
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-45 187.2 157 65.0
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-45 186.4 157 65.0
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 7.4e-45 185.3 173 59.5
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-45 184.9 157 65.6
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-44 183.3 157 63.7
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 2.8e-44 183.3 228 49.6
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 5.3e-43 179.1 217 51.2
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-42 177.6 158 62.0
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-38 163.7 144 63.9
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 3.0e-38 163.3 108 75.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-37 158.3 157 58.0
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-36 156.4 160 56.9
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-36 156.4 160 56.9
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 3.1e-35 153.3 176 54.5
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 5.3e-35 152.5 104 70.2
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-34 150.2 94 81.9
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-33 147.9 107 72.9
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 2.9e-33 146.7 105 67.6
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.1e-32 144.8 337 36.5
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 5.5e-32 142.5 125 62.4
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 5.5e-32 142.5 123 63.4
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.0e-30 138.3 88 72.7
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 5.4e-27 125.9 81 77.8
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 5.9e-26 122.5 109 62.4
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 6.5e-25 119.0 156 49.4
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-20 104.8 70 77.1
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-20 103.2 133 46.6
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 6.3e-20 102.4 57 89.5
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-17 93.2 101 53.5
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-16 91.3 89 58.4
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 2.1e-15 87.4 55 72.7
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 8.0e-15 85.5 127 44.1
CSS0009944 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D109451 1.3e-09 68.2 38 89.5
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 7.3e-08 62.4 34 76.5
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 1.1e-06 58.5 111 36.0
MELO3C034534.2 Cucumis melo HOM05D004703 ORTHO05D005801 2.3e-06 57.4 38 68.4


User provided reference genes

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