Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042146 Camellia sinensis var. sinensis HOM05D008584 ORTHO05D010813 4.5e-28 127.1 59 100.0
CiPaw.04G167100 Carya illinoinensis HOM05D008584 ORTHO05D010813 6.9e-13 76.6 49 65.3
MD02G1062300 Malus domestica HOM05D008584 ORTHO05D010813 3.4e-12 74.3 45 68.9
Thecc.09G114800 Theobroma cacao HOM05D008584 ORTHO05D010813 1.7e-11 72.0 61 54.1
CANSAT56G1052 Cannabis sativa HOM05D008584 ORTHO05D010813 2.2e-11 71.6 50 60.0
RcHm_v2.0_Chr2g0091061 Rosa chinensis HOM05D008584 ORTHO05D010813 2.9e-11 71.2 61 50.8
FAN28G0880 Fragaria x ananassa HOM05D008584 ORTHO05D010813 3.8e-11 70.9 61 49.2
Prupe.7G227100 Prunus persica HOM05D008584 ORTHO05D010813 3.8e-11 70.9 50 60.0
ClCG11G002630 Citrullus lanatus HOM05D008584 ORTHO05D010813 8.5e-11 69.7 56 55.4
CsaV3_2G002450 Cucumis sativus L. HOM05D008584 ORTHO05D010813 8.5e-11 69.7 55 52.7
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 1.4e-10 68.9 45 64.4
CAN.G1710.8 Capsicum annuum HOM05D008584 ORTHO05D010813 4.2e-10 67.4 45 64.4
Duzib168G0012 Durio zibethinus HOM05D008584 ORTHO05D010813 2.1e-09 65.1 51 60.8
Manes.03G068582 Manihot esculenta HOM05D008584 ORTHO05D010813 2.1e-09 65.1 45 60.0
Manes.03G068566 Manihot esculenta HOM05D008584 ORTHO05D010813 2.7e-09 64.7 45 60.0
HPP92_000677 Vanilla planifolia HOM05D008584 ORTHO05D010813 3.6e-09 64.3 59 52.5
Cc06_g09330 Coffea canephora HOM05D008584 ORTHO05D010813 4.7e-09 63.9 50 54.0
Phvul.011G012500 Phaseolus vulgaris HOM05D008584 ORTHO05D010813 4.7e-09 63.9 41 63.4
C08p08150 Brassica napus HOM05D008584 ORTHO05D010813 7.9e-09 63.2 43 62.8
BolC8t47667H Brassica oleracea HOM05D008584 ORTHO05D010813 7.9e-09 63.2 43 62.8
Nn2g11826 Nelumbo nucifera HOM05D008584 ORTHO05D010813 1.0e-08 62.8 55 49.1
Gohir.A05G021200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 2.3e-08 61.6 51 56.9
Gohir.D05G022600 Gossypium hirsutum HOM05D008584 ORTHO05D010813 2.3e-08 61.6 51 56.9
Nn8g39267 Nelumbo nucifera HOM05D008584 ORTHO05D010813 3.0e-08 61.2 55 49.1
AL9U10260 Arabidopsis lyrata HOM05D008584 ORTHO05D010813 3.9e-08 60.8 44 61.4
A08p06820 Brassica napus HOM05D008584 ORTHO05D010813 3.9e-08 60.8 44 61.4
BraA08t32700Z Brassica rapa HOM05D008584 ORTHO05D010813 3.9e-08 60.8 44 61.4
CARHR218960 Cardamine hirsuta HOM05D008584 ORTHO05D010813 3.9e-08 60.8 50 54.0
AT4G13395 Arabidopsis thaliana HOM05D008584 ORTHO05D010813 6.7e-08 60.1 44 61.4
Os05g0179100 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 8.8e-08 59.7 59 44.1
Gohir.D07G004000 Gossypium hirsutum HOM05D008584 ORTHO05D010813 2.0e-07 58.5 60 46.7
Carub.0007s2917 Capsella rubella HOM05D008584 ORTHO05D010813 4.4e-07 57.4 51 54.9
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 4.4e-07 57.4 45 53.3
Zm00001eb282970 Zea mays HOM05D008584 ORTHO05D010813 7.4e-07 56.6 38 63.2
PSO274G0001 Papaver somniferum HOM05D001415 ORTHO05D001075 8.2e-06 53.1 40 55.0
PSO513G0025 Papaver somniferum HOM05D001415 ORTHO05D001075 8.2e-06 53.1 40 55.0


User provided reference genes

Program Settings