Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042132 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 2.8e-220 768.5 433 100.0
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 3.6e-98 362.8 431 53.4
Actinidia03719 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.4e-97 360.9 433 51.3
Actinidia20443 Actinidia chinensis HOM05D001944 ORTHO05D014293 8.8e-97 358.2 419 53.2
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 2.6e-85 320.1 341 56.0
Dinv32718 Davidia involucrata HOM05D001944 ORTHO05D002405 6.1e-82 308.9 440 46.6
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 8.0e-82 308.5 439 46.5
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 4.9e-47 193.0 333 41.4
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 4.3e-43 179.9 333 40.8
Actinidia24118 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.3e-28 131.7 249 42.2
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 3.0e-28 130.6 505 27.3
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 2.6e-24 117.5 434 28.6
Haze_23780 Corylus avellana HOM05D001944 ORTHO05D002405 2.2e-23 114.4 344 32.0
Oeu056301.1 Olea europaea HOM05D001944 ORTHO05D002405 7.1e-22 109.4 430 28.6
Oeu013469.1 Olea europaea HOM05D001944 ORTHO05D002405 2.7e-21 107.5 397 30.2
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 1.1e-19 102.1 374 28.9
Migut.D02244 Erythranthe guttata HOM05D001944 ORTHO05D002405 6.9e-17 92.8 197 34.5
MSTRG.12332 Avicennia marina HOM05D001944 ORTHO05D002405 1.2e-16 92.0 414 27.5
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 3.4e-16 90.5 356 28.4
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 3.8e-15 87.0 383 28.5
Ciclev10027663m.g Citrus clementina HOM05D001944 ORTHO05D002405 3.2e-14 84.0 347 27.1
Lj1A201T35 Lonicera japonica HOM05D001944 ORTHO05D011318 1.2e-13 82.0 157 36.3
Potri.005G010133 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.6e-13 81.6 270 30.4
Sabra05G0007500 Salix brachista HOM05D001944 ORTHO05D002405 2.1e-13 81.3 314 27.7
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 2.7e-13 80.9 428 26.6
Oeu002984.1 Olea europaea HOM05D001944 ORTHO05D002405 1.0e-12 79.0 398 25.9
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 5.1e-12 76.6 286 28.7
Nitab4.5_0000181g0180 Nicotiana tabacum HOM05D001944 ORTHO05D002405 6.6e-12 76.3 263 27.4
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 3.3e-11 73.9 286 26.6
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 7.3e-11 72.8 348 28.7
SalBow3G3117 Salvia bowleyana HOM05D001944 ORTHO05D002405 7.3e-11 72.8 124 32.3
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 8.1e-10 69.3 308 26.3
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 1.1e-09 68.9 243 26.3
Nitab4.5_0006619g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 2.4e-09 67.8 354 24.9
MSTRG.18675 Avicennia marina HOM05D001944 ORTHO05D002405 4.0e-09 67.0 310 25.8
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 5.3e-09 66.6 215 27.4
SGA_v2.0_scaffold180G39633 Striga asiatica HOM05D001944 ORTHO05D002405 5.3e-09 66.6 174 28.7
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 6.9e-09 66.2 323 26.3
Nitab4.5_0000602g0020 Nicotiana tabacum HOM05D001944 ORTHO05D002405 6.9e-09 66.2 406 22.2
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 6.9e-09 66.2 200 29.5
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 6.9e-09 66.2 473 23.0
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 9.0e-09 65.9 180 29.4
COL.COLO4_18305 Corchorus olitorius HOM05D001944 ORTHO05D002405 9.0e-09 65.9 166 30.7
Nitab4.5_0006532g0030 Nicotiana tabacum HOM05D001944 ORTHO05D002405 1.5e-08 65.1 412 23.3
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 5.8e-08 63.2 249 25.7
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 5.8e-08 63.2 260 25.4
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 9.9e-08 62.4 257 26.8
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 2.2e-07 61.2 202 29.2
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 2.2e-07 61.2 156 32.1
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 1.1e-06 58.9 306 25.2
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 1.4e-06 58.5 166 28.9
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 5.5e-06 56.6 399 24.1
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 7.1e-06 56.2 399 23.8
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 9.3e-06 55.8 166 28.3
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 9.3e-06 55.8 265 25.7


User provided reference genes

Program Settings