Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.4e-189 664.5 331 100.0
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 3.2e-155 552.0 331 82.5
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 1.2e-151 540.0 331 81.6
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.4e-147 525.8 324 79.9
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 2.1e-146 522.7 328 78.4
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.5e-144 516.5 331 78.2
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.9e-144 516.2 328 77.4
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 9.5e-144 513.8 328 77.1
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 3.6e-143 511.9 328 76.5
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 8.1e-143 510.8 328 76.8
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 2.2e-140 502.7 328 75.3
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 6.4e-140 501.1 328 75.0
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 2.1e-138 496.1 327 74.0
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 2.7e-138 495.7 336 74.1
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 7.8e-138 494.2 328 74.1
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 1.3e-137 493.4 328 73.2
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 3.9e-137 491.9 330 74.5
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 6.6e-137 491.1 329 72.6
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.1e-136 490.3 326 73.3
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.5e-136 490.0 326 74.8
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 1.5e-136 490.0 326 71.8
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.9e-136 489.6 329 73.3
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 2.5e-136 489.2 330 73.6
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 4.3e-136 488.4 326 75.2
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 4.3e-136 488.4 328 74.1
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 4.3e-136 488.4 329 71.7
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.6e-136 487.3 325 71.1
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 9.6e-136 487.3 328 73.5
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 1.6e-135 486.5 327 72.8
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.1e-135 486.1 330 72.7
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.1e-135 486.1 329 71.1
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 2.8e-135 485.7 325 72.3
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 3.6e-135 485.3 328 71.6
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 8.1e-135 484.2 330 71.5
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 8.1e-135 484.2 330 71.5
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 8.1e-135 484.2 330 71.2
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 1.4e-134 483.4 330 73.3
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 2.4e-134 482.6 328 71.6
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.4e-134 482.6 325 70.2
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.1e-134 482.3 325 70.5
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.2e-134 481.5 324 73.5
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 3.4e-133 478.8 325 71.1
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 9.9e-133 477.2 323 74.3
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 9.9e-133 477.2 327 71.6
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 9.9e-133 477.2 323 73.4
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.7e-132 476.5 326 71.8
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 3.8e-132 475.3 325 70.5
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 6.4e-132 474.6 326 72.7
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 8.4e-132 474.2 325 72.6
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.4e-131 473.4 322 71.7
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 3.2e-131 472.2 328 70.1
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 3.2e-131 472.2 333 71.8
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 4.2e-131 471.9 328 73.2
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 4.2e-131 471.9 330 70.3
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 7.1e-131 471.1 326 71.2
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.1e-130 469.5 326 70.9
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 3.5e-130 468.8 328 70.4
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 3.5e-130 468.8 328 69.8
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 7.8e-130 467.6 329 71.1
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 2.3e-129 466.1 325 70.8
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 3.9e-129 465.3 326 70.2
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 3.9e-129 465.3 324 71.9
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.9e-128 463.0 324 67.6
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.9e-128 463.0 328 68.6
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 2.5e-128 462.6 326 69.6
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 4.3e-128 461.8 326 69.6
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 7.3e-128 461.1 328 69.5
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.3e-127 460.3 322 69.9
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 1.1e-126 457.2 327 68.5
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.1e-126 457.2 323 67.8
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 1.4e-126 456.8 324 67.3
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 5.3e-126 454.9 326 68.1
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.2e-125 453.8 329 67.2
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 1.5e-125 453.4 328 68.9
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 4.4e-125 451.8 422 60.2
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 2.2e-124 449.5 328 67.4
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 3.2e-123 445.7 328 68.0
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 3.2e-123 445.7 330 67.6
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 3.2e-123 445.7 323 67.5
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 9.3e-123 444.1 325 66.2
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.2e-122 443.7 373 62.2
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 3.0e-121 439.1 326 65.3
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 3.9e-121 438.7 309 69.9
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 6.6e-121 438.0 320 68.1
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.9e-120 436.4 281 76.9
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 3.3e-120 435.6 326 64.4
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 3.3e-120 435.6 311 67.8
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 5.6e-120 434.9 326 66.3
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.4e-120 434.5 325 64.3
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 1.3e-119 433.7 326 64.4
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.6e-119 433.3 326 63.5
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.4e-118 430.3 326 65.0
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.8e-118 429.9 326 63.2
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 4.0e-118 428.7 324 63.6
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 9.0e-118 427.6 324 63.0
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.2e-117 427.2 326 63.2
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 2.0e-117 426.4 326 62.0
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.1e-115 420.6 268 78.4
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.9e-115 419.9 324 65.1
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 4.2e-115 418.7 326 62.0
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.6e-114 416.8 307 66.1
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 2.7e-114 416.0 325 60.6
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 2.7e-114 416.0 325 60.9
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 4.6e-114 415.2 325 64.0
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 6.0e-114 414.8 259 79.9
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 5.1e-113 411.8 325 60.3
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 1.1e-112 410.6 326 60.4
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 9.6e-112 407.5 306 66.0
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 5.3e-110 401.7 382 57.1
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 6.9e-110 401.4 202 98.0
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 9.3e-107 391.0 546 42.9
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.9e-106 387.9 292 65.8
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.5e-104 383.6 324 57.4
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.7e-104 381.7 326 61.0
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 3.7e-103 379.0 325 58.2
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.9e-101 371.7 326 58.9
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.9e-98 361.3 325 56.3
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.9e-96 356.7 687 35.8
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 5.7e-96 355.1 291 61.9
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 4.8e-95 352.1 329 56.5
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 1.2e-93 347.4 285 63.9
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 3.0e-89 332.8 223 72.2
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 9.7e-88 327.8 315 52.1
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 4.8e-87 325.5 267 60.7
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.8e-86 323.6 315 50.5
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 4.5e-85 318.9 312 51.0
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 3.8e-84 315.8 233 66.1
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.8e-84 315.8 260 63.5
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 7.4e-80 301.6 178 82.6
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.5e-75 287.3 309 47.2
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 5.9e-69 265.4 224 60.3
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 2.2e-55 220.3 300 38.3
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 5.4e-46 189.1 199 47.7
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 6.2e-42 175.6 96 88.5
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 4.3e-35 152.9 99 70.7
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 2.9e-31 140.2 99 67.7
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.1e-29 134.0 75 82.7
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.3e-28 131.3 87 77.0
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 6.6e-28 129.0 120 56.7
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.6e-28 128.6 96 64.6
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.9e-27 127.5 96 64.6
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 1.7e-23 114.4 328 26.8
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 4.1e-22 109.8 88 61.4
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 1.7e-15 87.8 66 68.2
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.9e-15 87.0 84 48.8
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.3e-12 78.2 54 70.4
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 1.3e-12 78.2 54 70.4
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.7e-12 77.8 54 70.4
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.6e-10 71.2 56 60.7
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 3.6e-10 70.1 62 62.9
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.1e-09 67.0 43 67.4
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 3.2e-06 57.0 71 42.3


User provided reference genes

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