Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042080 Camellia sinensis var. sinensis HOM05D002632 ORTHO05D002881 4.1e-59 231.1 111 100.0
CSS0027222 Camellia sinensis var. sinensis HOM05D002632 ORTHO05D002881 2.9e-12 75.5 46 78.3
CSS0027550 Camellia sinensis var. sinensis HOM05D002632 ORTHO05D002881 2.9e-12 75.5 46 78.3
CSS0040167 Camellia sinensis var. sinensis HOM05D002632 ORTHO05D002881 2.9e-12 75.5 46 78.3
CSS0041499 Camellia sinensis var. sinensis HOM05D002632 ORTHO05D002881 7.2e-11 70.9 38 86.8
Rhsim04G0026300 Rhododendron simsii HOM05D002632 ORTHO05D002881 2.3e-09 65.9 46 71.7
MD04G1018000 Malus domestica HOM05D002632 ORTHO05D002881 5.1e-09 64.7 46 69.6
Dinv27193 Davidia involucrata HOM05D002632 ORTHO05D002881 1.5e-08 63.2 46 69.6
Hma1.2p1_0349F.1_g132020 Hydrangea macrophylla HOM05D002632 ORTHO05D002881 1.9e-08 62.8 46 65.2
Gohir.D10G137000 Gossypium hirsutum HOM05D002632 ORTHO05D002881 2.5e-08 62.4 46 65.2
ClCG05G007030 Citrullus lanatus HOM05D002632 ORTHO05D002881 3.3e-08 62.0 46 65.2
Gohir.A10G129200 Gossypium hirsutum HOM05D002632 ORTHO05D002881 3.3e-08 62.0 46 65.2
Gorai.011G152100 Gossypium raimondii HOM05D002632 ORTHO05D002881 3.3e-08 62.0 46 65.2
RcHm_v2.0_Chr4g0413351 Rosa chinensis HOM05D002632 ORTHO05D002881 3.3e-08 62.0 46 65.2
QL06p026917 Quercus lobata HOM05D002632 ORTHO05D002881 4.3e-08 61.6 46 65.2
Atru.chr4.1554 Acer truncatum HOM05D002632 ORTHO05D002881 5.7e-08 61.2 46 65.2
Eucgr.H00019 Eucalyptus grandis HOM05D002632 ORTHO05D002881 5.7e-08 61.2 46 65.2
FAN17G2987 Fragaria x ananassa HOM05D002632 ORTHO05D002881 5.7e-08 61.2 45 66.7
FvH4_4g13200 Fragaria vesca HOM05D002632 ORTHO05D002881 7.4e-08 60.8 45 66.7
FAN12G3214 Fragaria x ananassa HOM05D002632 ORTHO05D002881 7.4e-08 60.8 45 66.7
Sed0003247 Sechium edule HOM05D002632 ORTHO05D002881 7.4e-08 60.8 46 63.0
FAN07G0477 Fragaria x ananassa HOM05D002632 ORTHO05D002881 9.7e-08 60.5 45 66.7
Sed0007983 Sechium edule HOM05D002632 ORTHO05D002881 9.7e-08 60.5 46 63.0
RcHm_v2.0_Chr1g0331231 Rosa chinensis HOM05D002632 ORTHO05D002881 1.3e-07 60.1 40 70.0
CsaV3_3G015730 Cucumis sativus L. HOM05D002632 ORTHO05D002881 1.7e-07 59.7 46 63.0
Hund24429 Selenicereus undatus HOM05D002632 ORTHO05D002881 1.7e-07 59.7 45 68.9
Prupe.1G166800 Prunus persica HOM05D002632 ORTHO05D002881 2.2e-07 59.3 43 67.4
GSVIVG01031564001 Vitis vinifera HOM05D002632 ORTHO05D002881 2.2e-07 59.3 46 63.0
CiPaw.02G063400 Carya illinoinensis HOM05D002632 ORTHO05D002881 2.8e-07 58.9 46 60.9
Migut.N00425 Erythranthe guttata HOM05D002632 ORTHO05D002881 2.8e-07 58.9 46 58.7
Nitab4.5_0003263g0020 Nicotiana tabacum HOM05D002632 ORTHO05D002881 2.8e-07 58.9 46 58.7
Thecc.04G193800 Theobroma cacao HOM05D002632 ORTHO05D002881 2.8e-07 58.9 46 65.2
CiPaw.02G064000 Carya illinoinensis HOM05D002632 ORTHO05D002881 3.7e-07 58.5 41 65.9
Lju912C2G13 Lonicera japonica HOM05D002632 ORTHO05D002881 3.7e-07 58.5 40 67.5
Solyc12g098530.2 Solanum lycopersicum HOM05D002632 ORTHO05D002881 3.7e-07 58.5 46 58.7
Sopen12g033310 Solanum pennellii HOM05D002632 ORTHO05D002881 3.7e-07 58.5 46 58.7
PGSC0003DMG400004663 Solanum tuberosum HOM05D002632 ORTHO05D002881 3.7e-07 58.5 46 58.7
CANSAT78G1535 Cannabis sativa HOM05D002632 ORTHO05D002881 4.8e-07 58.2 45 62.2
MELO3C006772.2 Cucumis melo HOM05D002632 ORTHO05D002881 4.8e-07 58.2 46 63.0
Lsat_1_v5_gn_2_47660 Lactuca sativa HOM05D002632 ORTHO05D002881 4.8e-07 58.2 46 65.2
CAN.G767.18 Capsicum annuum HOM05D002632 ORTHO05D002881 6.3e-07 57.8 46 58.7
Duzib268G1539 Durio zibethinus HOM05D002632 ORTHO05D002881 6.3e-07 57.8 46 60.9
SalBow3G2534 Salvia bowleyana HOM05D002632 ORTHO05D002881 6.3e-07 57.8 46 60.9
COL.COLO4_05440 Corchorus olitorius HOM05D002632 ORTHO05D002881 1.1e-06 57.0 46 60.9
HanXRQChr15g0485811 Helianthus annuus HOM05D002632 ORTHO05D002881 1.4e-06 56.6 46 63.0
Phvul.001G266000 Phaseolus vulgaris HOM05D002632 ORTHO05D002881 1.8e-06 56.2 44 61.4
PGR142G2893 Punica granatum HOM05D002632 ORTHO05D002881 1.8e-06 56.2 48 56.2
Aqoxy2G02390 Aquilegia oxysepala HOM05D002632 ORTHO05D002881 2.4e-06 55.8 47 61.7
Actinidia35834 Actinidia chinensis HOM05D002632 ORTHO05D002881 3.1e-06 55.5 35 71.4
AUR62018546 Chenopodium quinoa HOM05D002632 ORTHO05D002881 3.1e-06 55.5 46 63.0
Ciclev10005461m.g Citrus clementina HOM05D002632 ORTHO05D002881 3.1e-06 55.5 46 58.7
Lj6g0021538 Lotus japonicus HOM05D002632 ORTHO05D002881 3.1e-06 55.5 46 56.5
Nitab4.5_0001574g0120 Nicotiana tabacum HOM05D002632 ORTHO05D002881 3.1e-06 55.5 46 56.5
arahy.Tifrunner.gnm1.ann1.82GX91 Arachis hypogaea HOM05D002632 ORTHO05D002881 4.1e-06 55.1 46 58.7
arahy.Tifrunner.gnm1.ann1.MV33TH Arachis hypogaea HOM05D002632 ORTHO05D002881 4.1e-06 55.1 46 58.7
MSTRG.24611 Avicennia marina HOM05D002632 ORTHO05D002881 4.1e-06 55.1 46 56.5
Manes.05G201800 Manihot esculenta HOM05D002632 ORTHO05D002881 4.1e-06 55.1 46 56.5
EL10Ac3g07443 Beta vulgaris HOM05D002632 ORTHO05D002881 5.3e-06 54.7 46 60.9
ECA238G4635 Erigeron canadensis HOM05D002632 ORTHO05D002881 5.3e-06 54.7 46 63.0
SGA_v2.0_scaffold4G02140 Striga asiatica HOM05D002632 ORTHO05D002881 6.9e-06 54.3 40 62.5
AUR62020873 Chenopodium quinoa HOM05D002632 ORTHO05D002881 9.1e-06 53.9 46 60.9
Sc13g0000450 Simmondsia chinensis HOM05D002632 ORTHO05D002881 9.1e-06 53.9 45 60.0


User provided reference genes

Program Settings