Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 0.0e+00 1281.2 664 100.0
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 0.0e+00 1226.8 666 96.1
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 7.2e-268 927.2 662 76.1
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 2.6e-265 918.7 654 75.2
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 1.4e-263 912.9 658 74.8
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 3.6e-259 898.3 670 72.7
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 1.1e-244 850.1 653 71.2
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 9.5e-244 847.0 658 69.9
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 4.9e-240 834.7 638 70.8
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 7.3e-228 794.3 661 66.1
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 4.8e-227 791.6 645 67.9
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 3.0e-221 772.3 655 62.9
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 6.6e-221 771.2 634 64.8
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 5.6e-220 768.1 652 63.5
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 9.0e-218 760.8 642 67.0
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 1.1e-215 753.8 646 63.3
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 1.4e-215 753.4 651 62.8
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 2.4e-215 752.7 659 60.8
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 1.0e-213 747.3 672 60.0
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.1e-212 743.8 650 61.2
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 9.6e-212 740.7 648 61.6
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 3.7e-211 738.8 653 62.6
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 3.4e-209 732.3 648 60.5
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 3.8e-208 728.8 656 59.6
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 1.1e-207 727.2 655 60.9
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 2.5e-207 726.1 653 60.9
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 1.6e-206 723.4 652 60.1
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 2.1e-206 723.0 657 61.8
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 2.7e-206 722.6 656 60.8
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 2.7e-206 722.6 648 60.5
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 4.6e-206 721.8 652 60.3
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 4.6e-206 721.8 652 60.0
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 6.0e-206 721.5 657 61.6
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 7.9e-206 721.1 657 61.3
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 1.0e-205 720.7 649 61.9
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 8.7e-205 717.6 658 61.4
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 1.9e-204 716.5 649 61.6
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.5e-204 716.1 653 60.2
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 7.4e-204 714.5 649 61.5
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.6e-203 713.4 653 60.0
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 4.8e-203 711.8 652 59.4
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 6.2e-203 711.4 652 59.7
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 5.3e-202 708.4 650 58.9
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 5.3e-202 708.4 655 60.0
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 1.5e-201 706.8 650 59.1
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 6.5e-200 701.4 654 59.2
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 1.1e-199 700.7 658 58.2
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.5e-199 699.5 623 61.0
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.2e-199 699.1 653 57.4
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 4.2e-199 698.7 652 58.9
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 1.2e-198 697.2 653 58.5
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.6e-198 696.8 654 60.1
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 6.1e-198 694.9 653 57.9
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 3.3e-196 689.1 653 57.9
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 3.3e-196 689.1 653 58.7
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 4.3e-196 688.7 655 57.7
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 7.4e-196 688.0 650 59.7
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 1.8e-194 683.3 655 57.4
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 1.8e-194 683.3 654 58.7
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 2.4e-194 682.9 628 59.1
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 3.1e-194 682.6 649 58.2
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 1.3e-192 677.2 651 57.6
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 1.7e-192 676.8 651 57.0
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 1.1e-191 674.1 666 56.9
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 5.5e-191 671.8 648 57.1
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 7.2e-191 671.4 599 60.8
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 9.4e-191 671.0 656 56.4
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 2.7e-190 669.5 682 54.8
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 4.6e-190 668.7 670 56.3
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 6.1e-190 668.3 646 57.9
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 1.0e-189 667.5 670 56.3
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.0e-189 667.5 670 56.1
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 1.4e-189 667.2 647 56.9
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.4e-189 667.2 653 55.9
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 2.3e-189 666.4 670 56.1
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 2.3e-189 666.4 652 56.4
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 3.9e-189 665.6 647 58.3
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 2.0e-188 663.3 670 56.0
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 3.3e-188 662.5 645 57.5
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 5.7e-188 661.8 652 55.8
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 9.7e-188 661.0 652 56.6
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 2.4e-186 656.4 658 58.1
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 1.2e-185 654.1 652 55.5
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 1.0e-184 651.0 657 58.4
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 6.5e-184 648.3 654 55.2
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 6.5e-184 648.3 647 55.5
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 4.2e-183 645.6 653 56.8
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 5.5e-183 645.2 651 54.5
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 9.4e-183 644.4 636 58.3
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 8.8e-181 637.9 643 56.8
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 1.5e-180 637.1 648 54.2
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 2.0e-180 636.7 649 54.4
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 3.3e-180 636.0 656 54.9
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 3.7e-179 632.5 648 55.4
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 6.3e-179 631.7 649 53.9
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 2.4e-178 629.8 641 56.2
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 4.1e-178 629.0 648 53.5
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 5.3e-178 628.6 652 54.3
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 1.2e-177 627.5 639 58.2
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 1.0e-176 624.4 640 55.3
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 1.7e-176 623.6 645 54.1
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 8.5e-176 621.3 640 57.3
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 9.4e-175 617.8 639 54.6
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 6.7e-173 611.7 674 52.5
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 4.8e-163 578.9 646 52.0
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 5.9e-161 572.0 648 53.2
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 8.0e-158 561.6 640 51.1
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 3.4e-156 556.2 639 51.8
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 5.4e-154 548.9 645 51.0
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 9.2e-154 548.1 629 51.2
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 1.6e-153 547.4 635 49.4
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 1.1e-151 541.2 641 49.1
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 5.6e-151 538.9 647 49.0
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 5.6e-151 538.9 638 48.7
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 1.6e-150 537.3 637 49.3
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 4.7e-150 535.8 635 48.2
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 1.0e-149 534.6 640 48.6
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 4.4e-148 529.3 633 48.2
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 1.1e-146 524.6 635 47.1
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 2.0e-145 520.4 638 48.4
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 5.9e-145 518.8 633 49.3
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 8.6e-144 515.0 636 47.0
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.5e-143 513.5 656 46.2
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 5.6e-143 512.3 650 47.1
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.4e-141 507.7 442 63.3
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 4.0e-141 506.1 635 49.1
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 6.8e-141 505.4 632 47.0
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 5.8e-140 502.3 635 46.9
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 5.0e-136 489.2 644 48.1
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 2.7e-129 466.8 635 44.4
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 6.0e-129 465.7 647 45.9
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 9.5e-127 458.4 470 57.4
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 1.2e-121 441.4 656 43.9
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 3.6e-118 429.9 671 41.3
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 1.1e-114 418.3 645 41.2
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 5.4e-114 416.0 646 41.5
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 4.6e-113 412.9 461 51.0
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 1.5e-111 407.9 586 46.2
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 2.6e-108 397.1 648 39.0
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 1.3e-102 378.3 641 41.0
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 2.6e-100 370.5 675 37.9
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 3.1e-93 347.1 392 48.7
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 7.1e-90 335.9 364 52.7
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 1.1e-87 328.6 364 52.2
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 1.3e-86 325.1 662 35.2
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 1.6e-81 308.1 369 48.2
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 2.7e-81 307.4 653 37.7
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 2.7e-81 307.4 639 34.9
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 5.1e-80 303.1 644 36.6
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 7.7e-68 262.7 694 29.8
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 9.7e-55 219.2 561 33.5
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 2.3e-48 198.0 195 53.3
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.2e-47 195.7 344 39.8
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.7e-44 184.5 118 71.2
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 5.0e-43 180.3 296 37.8
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 1.1e-37 162.5 234 41.9
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 6.4e-30 136.7 337 36.5
SEGI_04910 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 4.0e-24 117.5 149 43.0
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 3.3e-18 97.8 154 48.7
MBI13_g36805_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 7.8e-12 76.6 138 42.8
MBI13_g36809_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D240810 5.2e-08 63.9 47 55.3
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 8.9e-08 63.2 75 57.3


User provided reference genes

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