Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 0.0e+00 1352.8 756 100.0
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 4.8e-268 927.9 789 72.0
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.4e-267 925.6 788 71.8
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 2.0e-258 896.0 818 66.7
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 7.5e-253 877.5 839 64.7
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 2.1e-247 859.4 950 58.9
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 8.3e-236 820.8 813 63.3
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 9.2e-235 817.4 787 64.4
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 7.8e-234 814.3 819 62.9
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 1.1e-232 810.4 798 62.9
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 4.3e-232 808.5 788 63.3
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 6.2e-231 804.7 810 62.0
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 9.9e-229 797.3 824 60.8
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 2.9e-228 795.8 787 62.4
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 2.0e-221 773.1 814 61.4
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 6.6e-217 758.1 810 58.4
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 1.3e-215 753.8 802 59.9
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 4.8e-215 751.9 799 59.7
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.4e-214 750.4 806 58.3
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 3.0e-209 732.6 802 58.2
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 5.6e-208 728.4 826 56.9
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 9.6e-208 727.6 786 60.1
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 1.8e-206 723.4 780 57.8
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 2.2e-204 716.5 808 58.5
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.2e-204 716.5 784 58.5
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 2.9e-204 716.1 791 56.8
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 3.2e-203 712.6 798 57.1
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 3.0e-201 706.1 845 55.0
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 6.7e-201 704.9 797 56.0
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 2.5e-200 703.0 799 56.1
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 3.3e-200 702.6 726 60.3
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 5.6e-200 701.8 792 57.6
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 1.6e-199 700.3 806 56.6
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 2.1e-199 699.9 804 58.6
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 4.8e-199 698.7 818 55.6
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.1e-198 696.0 766 58.1
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 3.4e-197 692.6 803 58.8
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 6.5e-196 688.3 806 56.6
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 9.3e-195 684.5 791 56.8
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 9.3e-195 684.5 793 55.0
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 7.9e-194 681.4 799 54.6
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 1.1e-192 677.6 798 56.1
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.9e-192 676.8 788 56.5
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.5e-192 676.4 788 56.3
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 4.3e-192 675.6 793 54.9
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 7.4e-192 674.9 799 55.4
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 2.8e-191 672.9 788 56.5
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.1e-190 669.5 788 56.2
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 1.5e-189 667.2 799 53.8
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 2.0e-189 666.8 825 53.0
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 8.4e-188 661.4 798 53.8
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 9.3e-187 657.9 797 56.5
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 1.2e-186 657.5 805 53.4
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 1.6e-186 657.1 776 54.9
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 1.6e-186 657.1 800 53.5
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.3e-185 653.3 782 55.1
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.3e-184 649.4 810 54.3
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 5.7e-184 648.7 799 52.2
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 7.4e-184 648.3 786 56.1
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.6e-183 647.1 780 54.7
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 6.3e-183 645.2 807 53.9
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 5.3e-182 642.1 790 54.3
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 9.0e-182 641.3 785 54.4
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 1.2e-181 641.0 789 54.2
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 7.7e-181 638.3 789 53.5
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 3.8e-180 636.0 802 53.7
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 2.1e-178 630.2 786 53.1
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.1e-176 624.4 806 53.0
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.5e-176 623.2 785 54.0
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 5.7e-176 622.1 802 53.0
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 7.4e-176 621.7 794 52.3
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 6.5e-172 608.6 822 52.9
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 6.5e-172 608.6 725 54.1
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 1.2e-170 604.4 806 51.7
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 4.7e-170 602.4 800 52.5
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 4.4e-168 595.9 791 51.2
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.7e-167 594.0 795 51.1
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 6.3e-167 592.0 807 50.7
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 8.2e-167 591.7 786 50.9
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 2.0e-165 587.0 518 66.8
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 3.5e-165 586.3 791 50.3
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 7.7e-165 585.1 803 50.3
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 9.4e-163 578.2 696 54.9
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 2.3e-161 573.5 783 49.6
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 3.0e-161 573.2 795 49.8
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 5.2e-161 572.4 784 49.9
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 1.5e-160 570.9 868 47.2
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 1.3e-159 567.8 817 49.9
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.1e-158 562.8 610 58.7
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 1.0e-156 558.1 626 59.6
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.7e-156 557.4 626 59.7
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 5.0e-156 555.8 769 48.4
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 3.2e-155 553.1 638 55.6
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 7.2e-155 552.0 772 49.1
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 5.2e-153 545.8 774 51.8
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 8.8e-153 545.0 817 49.3
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 2.6e-152 543.5 801 49.1
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 5.7e-152 542.3 849 47.0
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 7.5e-152 542.0 775 48.5
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 9.8e-152 541.6 789 49.4
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 1.7e-148 530.8 521 60.3
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 2.9e-148 530.0 735 50.9
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 2.5e-147 526.9 781 48.0
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 4.7e-146 522.7 798 47.0
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 1.5e-144 517.7 767 46.0
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 2.2e-143 513.8 695 50.8
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 6.3e-143 512.3 771 46.4
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.8e-142 510.8 762 46.3
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 2.4e-142 510.4 771 46.3
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 4.1e-142 509.6 771 46.3
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 9.1e-142 508.4 769 46.3
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 9.1e-142 508.4 767 47.1
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 1.2e-141 508.1 761 45.6
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 3.5e-141 506.5 773 45.1
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 7.7e-141 505.4 773 46.8
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.0e-140 505.0 770 45.6
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 5.6e-139 499.2 767 46.0
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 2.1e-138 497.3 777 46.3
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 8.9e-137 491.9 827 43.5
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 2.0e-136 490.7 763 45.5
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 3.4e-136 490.0 779 45.4
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 9.2e-134 481.9 779 45.4
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 1.7e-132 477.6 781 45.1
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 2.8e-130 470.3 700 47.6
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.4e-129 468.0 769 45.1
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 4.0e-129 466.5 718 45.8
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 4.9e-127 459.5 786 44.3
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 8.3e-127 458.8 761 44.8
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 7.3e-123 445.7 664 47.3
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 2.6e-120 437.2 731 43.8
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 1.1e-115 421.8 791 41.8
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 2.8e-114 417.2 613 48.5
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 2.1e-106 391.0 484 51.9
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 2.0e-104 384.4 376 60.4
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.9e-99 367.9 329 62.9
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 9.0e-97 359.0 371 59.8
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 3.2e-94 350.5 697 39.9
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 4.2e-94 350.1 773 38.2
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 1.1e-89 335.5 372 58.9
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 1.2e-85 322.0 387 52.7
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.6e-82 311.6 396 54.0
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.4e-73 282.0 382 50.5
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 3.0e-60 237.7 252 57.5
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 3.3e-59 234.2 304 52.0
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 2.0e-56 224.9 713 32.1
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 1.4e-54 218.8 191 66.5
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.6e-53 215.3 747 32.3
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 5.9e-48 196.8 324 40.4
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 2.6e-43 181.4 171 62.0
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.0e-39 169.5 145 62.1
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.3e-34 152.5 162 60.5
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 7.7e-32 143.3 138 59.4
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 8.5e-31 139.8 182 52.2
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 9.2e-25 119.8 253 38.7
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 2.8e-21 108.2 120 52.5
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 6.1e-21 107.1 117 59.8
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.4e-19 101.3 157 52.2
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.2e-18 98.6 62 80.6
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 2.4e-17 95.1 222 37.8
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.3e-15 89.4 95 58.9
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 1.3e-15 89.4 313 31.9
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 1.3e-15 89.4 80 57.5
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.7e-15 89.0 382 27.2
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 1.2e-13 82.8 298 29.2
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 2.1e-13 82.0 204 31.9
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.5e-11 75.9 483 27.7
arahy.Tifrunner.gnm1.ann1.TR1UXP Arachis hypogaea HOM05D003721 ORTHO05D004303 1.4e-09 69.3 68 61.8
arahy.Tifrunner.gnm1.ann1.B4ZXCR Arachis hypogaea HOM05D003721 ORTHO05D004303 1.9e-09 68.9 68 60.3
arahy.Tifrunner.gnm1.ann1.EAH0NM Arachis hypogaea HOM05D003721 ORTHO05D004303 2.4e-09 68.6 68 61.8
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 4.1e-09 67.8 85 49.4
arahy.Tifrunner.gnm1.ann1.4H30G8 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-08 66.2 68 58.8
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.2e-08 66.2 85 49.4
arahy.Tifrunner.gnm1.ann1.2H8IEQ Arachis hypogaea HOM05D003721 ORTHO05D004303 2.0e-08 65.5 68 58.8
arahy.Tifrunner.gnm1.ann1.0WEA7F Arachis hypogaea HOM05D003721 ORTHO05D004303 4.6e-08 64.3 68 57.4
arahy.Tifrunner.gnm1.ann1.BE33XR Arachis hypogaea HOM05D003721 ORTHO05D004303 4.6e-08 64.3 63 60.3
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 6.0e-08 63.9 309 30.1
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.0e-07 60.8 482 24.3


User provided reference genes

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