Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 2.0e-228 795.4 399 100.0
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 2.6e-188 662.1 392 87.8
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 1.5e-159 566.6 396 75.5
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 2.6e-148 529.3 376 73.9
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 7.2e-146 521.2 399 69.2
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.1e-143 513.8 388 70.4
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 1.5e-143 513.5 396 67.7
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 7.0e-141 504.6 388 66.2
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 9.1e-141 504.2 410 66.8
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.1e-138 497.3 398 64.6
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 2.5e-138 496.1 415 65.1
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 5.5e-138 495.0 407 65.6
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 5.5e-138 495.0 411 65.7
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 9.4e-138 494.2 410 65.9
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 1.6e-137 493.4 405 64.4
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 8.8e-136 487.6 430 62.1
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 1.3e-134 483.8 396 65.7
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 2.2e-134 483.0 388 64.2
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 1.1e-133 480.7 396 64.6
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 1.6e-132 476.9 401 64.6
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 2.7e-132 476.1 404 63.6
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 2.7e-132 476.1 409 63.3
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 3.5e-132 475.7 402 63.2
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 4.5e-132 475.3 407 63.9
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 1.3e-131 473.8 405 63.2
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 1.3e-131 473.8 416 62.0
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 1.3e-131 473.8 411 62.5
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 1.7e-131 473.4 402 61.9
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 2.9e-131 472.6 409 63.6
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 6.5e-131 471.5 406 64.8
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 1.1e-130 470.7 419 61.6
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 1.5e-130 470.3 396 65.2
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 4.2e-130 468.8 393 61.6
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 1.6e-129 466.8 409 62.1
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 2.7e-129 466.1 387 63.3
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 3.6e-129 465.7 410 61.2
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 3.6e-129 465.7 407 62.7
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 6.1e-129 464.9 410 61.2
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 6.1e-129 464.9 413 60.5
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 6.1e-129 464.9 396 63.6
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 1.4e-128 463.8 396 61.6
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 1.4e-128 463.8 396 62.9
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 5.2e-128 461.8 412 61.7
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 8.8e-128 461.1 416 61.5
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 1.2e-127 460.7 396 61.4
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 2.0e-127 459.9 416 61.1
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 2.6e-127 459.5 412 60.7
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 3.4e-127 459.1 419 60.6
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 4.4e-127 458.8 401 63.3
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 2.8e-126 456.1 410 60.7
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 1.4e-125 453.8 397 62.5
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 1.4e-125 453.8 409 60.6
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 3.1e-125 452.6 398 60.6
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 3.1e-125 452.6 409 60.1
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 5.4e-125 451.8 411 61.1
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 1.6e-124 450.3 398 60.8
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 4.5e-124 448.7 396 61.9
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 1.3e-123 447.2 402 60.9
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 1.9e-122 443.4 394 60.2
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 2.1e-121 439.9 392 60.7
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.6e-121 439.1 403 60.5
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.8e-120 436.8 400 60.8
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 4.0e-120 435.6 410 58.8
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 6.8e-120 434.9 396 61.1
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 9.8e-119 431.0 461 56.4
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.3e-118 430.6 404 60.4
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 1.7e-118 430.3 409 58.2
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 3.7e-118 429.1 360 65.6
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 9.2e-117 424.5 399 59.9
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 1.6e-116 423.7 392 58.7
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 1.6e-116 423.7 403 59.3
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 2.7e-116 422.9 414 56.3
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 5.9e-116 421.8 398 59.3
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 1.0e-115 421.0 398 59.3
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 1.5e-114 417.2 396 60.1
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 1.9e-114 416.8 395 58.7
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 4.3e-114 415.6 397 58.7
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 1.6e-113 413.7 396 58.3
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.6e-113 413.7 405 58.5
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 3.6e-113 412.5 396 58.1
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 3.1e-112 409.5 396 58.6
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 3.1e-112 409.5 396 58.6
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 2.6e-111 406.4 400 55.0
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 2.6e-111 406.4 393 56.2
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 5.8e-111 405.2 392 57.4
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 9.8e-111 404.4 396 57.3
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 9.8e-111 404.4 396 57.3
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 2.2e-110 403.3 403 58.1
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 3.7e-110 402.5 371 62.0
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 3.7e-110 402.5 392 57.1
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.6e-108 397.1 249 83.1
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 2.0e-108 396.7 398 55.3
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 7.8e-108 394.8 373 58.7
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.3e-107 394.0 307 69.4
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 2.3e-107 393.3 390 57.2
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 6.2e-105 385.2 417 54.9
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 1.5e-103 380.6 383 55.6
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 1.3e-102 377.5 374 57.0
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 4.9e-102 375.6 396 55.1
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 1.2e-100 370.9 391 54.0
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 7.8e-100 368.2 348 56.6
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 3.3e-90 336.3 436 47.2
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 3.9e-75 286.2 262 60.3
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 2.0e-71 273.9 406 41.1
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 1.9e-69 267.3 347 46.7
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 4.2e-69 266.2 403 40.0
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 4.2e-69 266.2 403 40.0
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 4.9e-62 242.7 397 39.8
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.4e-53 214.5 134 78.4
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 5.5e-29 132.9 412 29.4
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 4.7e-28 129.8 89 73.0
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 4.7e-28 129.8 301 33.2
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 6.3e-25 119.4 82 68.3
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 2.0e-18 97.8 168 38.1
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 5.4e-16 89.7 83 62.7
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 3.8e-14 83.6 52 76.9
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 2.5e-13 80.9 50 74.0
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 2.5e-13 80.9 50 74.0
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 3.4e-10 70.5 154 40.3
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 5.7e-10 69.7 126 37.3
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 1.1e-08 65.5 56 51.8
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 1.8e-08 64.7 103 37.9
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 3.1e-08 63.9 45 62.2
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 4.5e-07 60.1 98 44.9


User provided reference genes

Program Settings