Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 2.1e-52 208.8 107 100.0
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 5.1e-38 161.0 107 78.5
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 2.8e-36 155.2 108 75.0
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 6.2e-36 154.1 107 74.8
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 2.6e-34 148.7 107 72.0
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 5.8e-34 147.5 107 71.0
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 3.9e-30 134.8 107 67.3
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 1.1e-29 133.3 107 65.4
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 2.5e-29 132.1 107 67.3
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 3.3e-29 131.7 109 67.9
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 3.3e-29 131.7 107 66.4
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 3.3e-29 131.7 107 64.5
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 1.3e-28 129.8 107 64.5
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 1.3e-28 129.8 107 63.6
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 2.8e-28 128.6 107 65.4
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 4.8e-28 127.9 107 63.6
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 4.8e-28 127.9 106 61.3
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 1.1e-27 126.7 107 64.5
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 1.8e-27 125.9 107 59.8
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 2.4e-27 125.6 105 62.9
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 6.9e-27 124.0 104 61.5
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 1.2e-26 123.2 107 62.6
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 4.5e-26 121.3 106 61.3
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 9.9e-26 120.2 105 62.9
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 9.9e-26 120.2 107 55.1
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 1.3e-25 119.8 107 56.1
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 1.3e-25 119.8 101 61.4
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.7e-25 119.4 101 62.4
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 3.8e-25 118.2 108 58.3
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 8.4e-25 117.1 104 59.6
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 1.4e-24 116.3 107 56.1
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 4.2e-24 114.8 105 61.0
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 5.4e-24 114.4 106 59.4
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 2.1e-23 112.5 104 59.6
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.7e-23 112.1 104 56.7
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 2.7e-23 112.1 104 59.6
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 4.6e-23 111.3 81 75.3
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 6.0e-23 110.9 104 60.6
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 6.0e-23 110.9 107 57.0
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 1.3e-22 109.8 107 61.7
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 1.3e-22 109.8 108 60.2
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 1.3e-22 109.8 107 57.0
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.8e-22 109.4 107 57.0
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.8e-22 109.4 107 57.0
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 1.8e-22 109.4 104 54.8
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.8e-22 109.4 107 57.0
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 3.0e-22 108.6 104 59.6
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 3.0e-22 108.6 92 63.0
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 3.9e-22 108.2 103 59.2
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 5.1e-22 107.8 104 58.7
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 5.1e-22 107.8 104 58.7
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 5.1e-22 107.8 109 59.6
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 5.1e-22 107.8 107 56.1
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 5.1e-22 107.8 107 57.0
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 5.1e-22 107.8 106 58.5
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 6.7e-22 107.5 105 58.1
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 8.7e-22 107.1 105 55.2
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 8.7e-22 107.1 109 57.8
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 1.1e-21 106.7 107 54.2
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.1e-21 106.7 108 56.5
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.1e-21 106.7 107 56.1
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 1.5e-21 106.3 108 56.5
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 1.5e-21 106.3 106 58.5
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.5e-21 106.3 104 56.7
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.5e-21 106.3 88 68.2
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 1.5e-21 106.3 107 55.1
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 1.9e-21 105.9 106 56.6
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 1.9e-21 105.9 104 57.7
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.9e-21 105.9 109 55.0
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.9e-21 105.9 107 55.1
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 2.5e-21 105.5 106 57.5
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 2.5e-21 105.5 108 54.6
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 2.5e-21 105.5 105 56.2
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 3.3e-21 105.1 105 55.2
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 3.3e-21 105.1 102 57.8
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 3.3e-21 105.1 108 55.6
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 7.4e-21 104.0 104 54.8
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 9.6e-21 103.6 106 56.6
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.6e-20 102.8 106 55.7
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 2.1e-20 102.4 105 57.1
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 2.1e-20 102.4 107 54.2
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 2.1e-20 102.4 101 59.4
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 2.8e-20 102.1 104 55.8
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 3.7e-20 101.7 105 55.2
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 4.8e-20 101.3 108 55.6
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 6.2e-20 100.9 108 53.7
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 8.1e-20 100.5 105 57.1
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 8.1e-20 100.5 105 57.1
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 8.1e-20 100.5 105 54.3
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.1e-19 100.1 105 57.1
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 1.1e-19 100.1 104 53.8
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 1.1e-19 100.1 104 54.8
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 1.4e-19 99.8 108 54.6
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 1.8e-19 99.4 104 54.8
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 2.4e-19 99.0 109 54.1
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 2.4e-19 99.0 109 55.0
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 2.4e-19 99.0 109 54.1
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 2.4e-19 99.0 109 55.0
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 2.4e-19 99.0 107 57.9
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 2.4e-19 99.0 104 53.8
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.4e-19 99.0 82 65.9
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 3.1e-19 98.6 109 55.0
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 3.1e-19 98.6 109 55.0
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 3.1e-19 98.6 109 55.0
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 4.0e-19 98.2 106 56.6
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 4.0e-19 98.2 99 57.6
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 5.3e-19 97.8 108 54.6
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 6.9e-19 97.4 102 52.0
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 6.9e-19 97.4 104 52.9
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 6.9e-19 97.4 104 52.9
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 6.9e-19 97.4 96 57.3
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 9.0e-19 97.1 104 53.8
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 9.0e-19 97.1 98 55.1
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 1.2e-18 96.7 97 60.8
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 1.5e-18 96.3 108 55.6
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 1.5e-18 96.3 104 52.9
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 2.0e-18 95.9 108 51.9
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 2.0e-18 95.9 105 55.2
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 3.4e-18 95.1 108 53.7
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 4.5e-18 94.7 108 55.6
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 4.5e-18 94.7 108 53.7
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 4.5e-18 94.7 83 59.0
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 4.5e-18 94.7 95 54.7
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 5.8e-18 94.4 108 51.9
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 9.9e-18 93.6 102 51.0
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 1.3e-17 93.2 80 60.0
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 1.7e-17 92.8 104 50.0
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 2.2e-17 92.4 99 56.6
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 3.8e-17 91.7 108 50.9
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 4.9e-17 91.3 109 51.4
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 4.9e-17 91.3 108 50.9
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 4.9e-17 91.3 104 51.0
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 8.4e-17 90.5 105 53.3
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 1.9e-16 89.4 109 51.4
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 1.9e-16 89.4 109 51.4
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.9e-16 89.4 109 51.4
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 1.9e-16 89.4 93 55.9
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 2.4e-16 89.0 104 51.9
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 2.4e-16 89.0 102 50.0
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 3.2e-16 88.6 109 49.5
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 5.5e-16 87.8 83 54.2
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 5.5e-16 87.8 104 49.0
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 5.5e-16 87.8 70 64.3
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 5.5e-16 87.8 104 50.0
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 7.1e-16 87.4 69 68.1
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 7.1e-16 87.4 106 50.0
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 1.2e-15 86.7 69 66.7
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 1.2e-15 86.7 109 50.5
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.2e-15 86.7 109 50.5
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 2.1e-15 85.9 109 49.5
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 2.1e-15 85.9 109 49.5
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 2.1e-15 85.9 88 58.0
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 2.1e-15 85.9 100 56.0
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 3.5e-15 85.1 109 48.6
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 3.5e-15 85.1 109 49.5
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 3.5e-15 85.1 109 49.5
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 4.6e-15 84.7 105 52.4
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 4.6e-15 84.7 86 57.0
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 6.0e-15 84.3 76 56.6
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 1.8e-14 82.8 91 53.8
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 1.8e-14 82.8 91 53.8
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 1.8e-14 82.8 83 54.2
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 2.3e-14 82.4 91 53.8
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.9e-14 81.6 105 45.7
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 8.7e-14 80.5 105 45.7
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 8.7e-14 80.5 105 45.7
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 2.5e-13 79.0 99 50.5
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 7.4e-13 77.4 89 52.8
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 7.4e-13 77.4 89 52.8
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 1.3e-12 76.6 95 49.5
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 1.6e-12 76.3 87 54.0
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 2.1e-12 75.9 89 51.7
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 3.7e-12 75.1 105 49.5
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 1.4e-11 73.2 96 47.9
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 1.8e-11 72.8 80 50.0
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 4.0e-11 71.6 96 47.9
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 5.3e-11 71.2 64 62.5
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 1.2e-10 70.1 65 56.9
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 1.5e-10 69.7 102 47.1
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 2.0e-10 69.3 81 44.4
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 1.0e-09 67.0 94 44.7
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 2.9e-09 65.5 79 50.6
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 3.8e-09 65.1 75 46.7
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 4.9e-09 64.7 70 47.1
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 4.2e-08 61.6 82 50.0
Nitab4.5_0004781g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 2.7e-07 58.9 38 71.1
Nitab4.5_0005937g0030 Nicotiana tabacum HOM05D003613 ORTHO05D004055 2.3e-06 55.8 57 56.1


User provided reference genes

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